RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 POU2F3Q9UKI9 436 aa4.98□□□□□ -1.61
PRPF39-209ENST00000556353 ZNF711Q9Y462 761 aa4.98□□□□□ -1.61
PRPF39-209ENST00000556353 PCDHGB3Q9Y5G1 929 aa4.98□□□□□ -1.61
PRPF39-209ENST00000556353 PPIP5K1Q6PFW1 1433 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 MYOM1P52179 1685 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 NHSQ6T4R5 1651 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 CD163L1Q9NR16 1453 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 EIF3AQ14152 1382 aaKnown RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 AKR1B15C9JRZ8 316 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 GUCY1B2O75343 617 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 AGAP20933 346 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 SEC61BP60468 96 aaKnown RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 RELQ04864 619 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 UBE3AQ05086 875 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 SLC20A2Q08357 652 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 GRIK3Q13003 919 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 TCTN1Q2MV58 587 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 CPLX2Q6PUV4 134 aaKnown RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 BBS12Q6ZW61 710 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 MTSS1LQ765P7 747 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 SLC9B2Q86UD5 537 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 ZCCHC9Q8N567 271 aaKnown RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 PLD5Q8N7P1 536 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 WBP1Q96G27 269 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 ZSCAN31Q96LW9 406 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-209ENST00000556353 ARPC5LQ9BPX5 153 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 BPIFA1Q9NP55 256 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 ABCF3Q9NUQ8 709 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 TINAGQ9UJW2 476 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 FAM96BQ9Y3D0 163 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 STON1Q9Y6Q2 735 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 PAPPAQ13219 1627 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 USP6P35125 1406 aa4.97□□□□□ -1.61
PRPF39-209ENST00000556353 FAM208AQ9UK61 1670 aaKnown RBP4.96□□□□□ -1.61
PRPF39-209ENST00000556353 CPDO75976 1380 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 GPRASP1Q5JY77 1395 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 A0A1W2PS18 150 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 SLC22A3O75751 556 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 MT-CYBP00156 380 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 HEXAP06865 529 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 CENPBP07199 599 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 GALTP07902 379 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 PGM1P36871 562 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 EIF2S3P41091 472 aaKnown RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 TMPOP42166 694 aaKnown RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 RAD23BP54727 409 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 NFIL3Q16649 462 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 HIST2H2ACQ16777 129 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 GRAMD1BQ3KR37 738 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 ANKRD54Q6NXT1 300 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 TMEM81Q6P7N7 255 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 SLC36A4Q6YBV0 504 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 MARK2Q7KZI7 788 aaKnown RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 TAOK1Q7L7X3 1001 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 TICAM2Q86XR7 235 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 PPM1EQ8WY54 764 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 FBXO17Q96EF6 278 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 CDK19Q9BWU1 502 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 ESRP2Q9H6T0 727 aaKnown RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 MAGEE1Q9HCI5 957 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 ZNF334Q9HCZ1 680 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 MKKSQ9NPJ1 570 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 RIC8AQ9NPQ8 531 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 CNOT7Q9UIV1 285 aaKnown RBP4.96□□□□□ -1.62
PRPF39-209ENST00000556353 ACEP12821 1306 aa4.96□□□□□ -1.62
PRPF39-209ENST00000556353 KIF20BQ96Q89 1820 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 COL24A1Q17RW2 1714 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 QSER1Q2KHR3 1735 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 DOT1LQ8TEK3 1739 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FAM72CH0Y354 149 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 URODP06132 367 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 G6PDP11413 515 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CDH1P12830 882 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 MARK3P27448 753 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 PSMC2P35998 433 aaKnown RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CLCNKAP51800 687 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 TDGQ13569 410 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CCDC6Q16204 474 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 SGO1Q5FBB7 561 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 ZNF766Q5HY98 468 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 KCNT1Q5JUK3 1230 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FAM72AQ5TYM5 149 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FAM72DQ6L9T8 149 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 RGMBQ6NW40 437 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 C19orf48Q6RUI8 117 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 SLC22A25Q6T423 547 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 LRRC8DQ7L1W4 858 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 LINGO2Q7L985 606 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 SLC26A9Q7LBE3 791 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FAM72BQ86X60 149 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FOXRED2Q8IWF2 684 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CHERPQ8IWX8 916 aaKnown RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 ODF3L1Q8IXM7 274 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 METTL27Q8N6F8 245 aaPredicted RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 DMBX1Q8NFW5 382 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 CDCA5Q96FF9 252 aa4.95□□□□□ -1.62
PRPF39-209ENST00000556353 INTS2Q9H0H0 1204 aaKnown RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 FBRSL1Q9HCM7 1045 aaKnown RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 BEX4Q9NWD9 120 aaPredicted RBP4.95□□□□□ -1.62
PRPF39-209ENST00000556353 HSF4Q9ULV5 492 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms