RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZFYVE1Q9HBF4 777 aa16.21■□□□□ 0.19
VPS29-207ENST00000549970 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.21■□□□□ 0.19
VPS29-207ENST00000549970 CNOT6Q9ULM6 557 aaKnown RBP16.21■□□□□ 0.19
VPS29-207ENST00000549970 TFR2Q9UP52 801 aa16.21■□□□□ 0.19
VPS29-207ENST00000549970 SHOC2Q9UQ13 582 aa16.21■□□□□ 0.19
VPS29-207ENST00000549970 TRBV23OR9-2A0A075B6M9 112 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 PPM1DO15297 605 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 ZW10O43264 779 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 CST8O60676 142 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 DNAJC6O75061 913 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 CPNE6O95741 557 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 MT-CYBP00156 380 aaPredicted RBP16.2■□□□□ 0.18
VPS29-207ENST00000549970 PECAM1P16284 738 aaPredicted RBP16.2■□□□□ 0.18
VPS29-207ENST00000549970 CDK18Q07002 472 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 TFDP2Q14188 446 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 NR1D2Q14995 579 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 TEX44Q53QW1 395 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 ALS2CLQ60I27 953 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 CHST15Q7LFX5 561 aaPredicted RBP16.2■□□□□ 0.18
VPS29-207ENST00000549970 SPATA22Q8NHS9 363 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 SLC39A7Q92504 469 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 EID2BQ96D98 161 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 CMKLR1Q99788 373 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 GLOD4Q9HC38 313 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 VPS18Q9P253 973 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 PCDHGA7Q9Y5G6 932 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 ALG6Q9Y672 507 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 ATMQ13315 3056 aa16.2■□□□□ 0.18
VPS29-207ENST00000549970 A0A0A6YYK5 440 aaPredicted RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 RGSL1A5PLK6 1076 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 ATXN7O15265 892 aaPredicted RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 PMPCBO75439 489 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 PRB1P04280 392 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 PTPN3P26045 913 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 ETV5P41161 510 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 NR2C2P49116 596 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 MAPK10P53779 464 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 HADHBP55084 474 aaKnown RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 CLN3Q13286 438 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 LRP8Q14114 963 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 C16orf72Q14CZ0 275 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 PRKD1Q15139 912 aaPredicted RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 TAZQ16635 292 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 NKAIN2Q5VXU1 208 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 SPOCD1Q6ZMY3 1216 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 BZW1Q7L1Q6 419 aaKnown RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 ZNF761Q86XN6 746 aaPredicted RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 SLC37A2Q8TED4 501 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 TFB1MQ8WVM0 346 aaKnown RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 HAUS1Q96CS2 278 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 SPATA16Q9BXB7 569 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 GPR63Q9BZJ6 419 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 ZMYND15Q9H091 742 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 ARFGAP3Q9NP61 516 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 UBP1Q9NZI7 540 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 KCNK6Q9Y257 313 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 ZNF711Q9Y462 761 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 PCDHA13Q9Y5I0 950 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 FASNP49327 2511 aaKnown RBP16.19■□□□□ 0.18
VPS29-207ENST00000549970 AHCTF1Q8WYP5 2266 aa16.19■□□□□ 0.18
VPS29-207ENST00000549970 EML2O95834 649 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 ACP5P13686 325 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 CD1CP29017 333 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 GPR3P46089 330 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 MARCKSL1P49006 195 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 PPM1FP49593 454 aaPredicted RBP16.18■□□□□ 0.18
VPS29-207ENST00000549970 ADCY2Q08462 1091 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 VAC14Q08AM6 782 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 SPA17Q15506 151 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 ZNF569Q5MCW4 686 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 ZNF648Q5T619 568 aaPredicted RBP16.18■□□□□ 0.18
VPS29-207ENST00000549970 CCDC70Q6NSX1 233 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 ZNF574Q6ZN55 896 aaPredicted RBP16.18■□□□□ 0.18
VPS29-207ENST00000549970 ZC3H18Q86VM9 953 aaKnown RBP16.18■□□□□ 0.18
VPS29-207ENST00000549970 CCDC50Q8IVM0 306 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 RCBTB1Q8NDN9 531 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 GPR26Q8NDV2 337 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 P3H4Q92791 437 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 TMEM159Q96B96 161 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 TADA1Q96BN2 335 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 TEKT5Q96M29 485 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 MAGEE1Q9HCI5 957 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 KCNK4Q9NYG8 393 aa16.18■□□□□ 0.18
VPS29-207ENST00000549970 AKAP7Q9P0M2 348 aaPredicted RBP16.18■□□□□ 0.18
VPS29-207ENST00000549970 hCG_1818297A0A087WSY0 165 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 IGHV1OR21-1A0A087WYE8 117 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 PRAMEF33A0A0G2JMD5 474 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 IGHV5-10-1A0A0J9YXX1 117 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 F5H423 210 aaPredicted RBP16.17■□□□□ 0.18
VPS29-207ENST00000549970 PRAMEF10O60809 474 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 ZRANB2O95218 330 aaKnown RBP eCLIP16.17■□□□□ 0.181e-7■■■■□ 19.3
VPS29-207ENST00000549970 LCA5LO95447 670 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 NDST3O95803 873 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 CD68P34810 354 aaPredicted RBP16.17■□□□□ 0.18
VPS29-207ENST00000549970 TGIF1Q15583 401 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 SLC14A2Q15849 920 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 CLPPQ16740 277 aaPredicted RBP16.17■□□□□ 0.18
VPS29-207ENST00000549970 TFDP3Q5H9I0 405 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 TMC3Q7Z5M5 1100 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 CCDC170Q8IYT3 715 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms