RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZC3HC1Q86WB0 502 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 ASB5Q8WWX0 329 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 GRAMD2BQ96HH9 432 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 METTL2AQ96IZ6 378 aaKnown RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 RADILQ96JH8 1075 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 FAM234AQ9H0X4 552 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 SIL1Q9H173 461 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS29-205ENST00000548539 WSB2Q9NYS7 404 aaPredicted RBP4.14□□□□□ -1.75
VPS29-205ENST00000548539 OR14J1Q9UGF5 321 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 FBXW11Q9UKB1 542 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 PLAGL1Q9UM63 463 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 PTGDR2Q9Y5Y4 395 aa4.14□□□□□ -1.75
VPS29-205ENST00000548539 ARHGEF40Q8TER5 1519 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 hCG_1809904A0A1W2PP81 198 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 A0A1W2PPE2 198 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 A0A1W2PR64 198 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 GLOD5A6NK44 160 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 INAFM1C9JVW0 142 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 H3BNX3 289 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 VWA5AO00534 786 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ASAP2O43150 1006 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 HIST1H2ABP04908 130 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ACTN1P12814 892 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 HIST1H2ADP20671 130 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 TBXAS1P24557 533 aaPredicted RBP4.13□□□□□ -1.75
VPS29-205ENST00000548539 LMAN1P49257 510 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 GPR143P51810 404 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 NUDT6P53370 316 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 UBXN2AP68543 259 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 TMF1P82094 1093 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 TNFAIP1Q13829 316 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ZNF805Q5CZA5 627 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 PAPPA-AS1Q5QFB9 102 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ARMC3Q5W041 872 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 DUS1LQ6P1R4 473 aaKnown RBP4.13□□□□□ -1.75
VPS29-205ENST00000548539 DENND5BQ6ZUT9 1274 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 HIST3H2AQ7L7L0 130 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 PIM3Q86V86 326 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 FOXRED2Q8IWF2 684 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 AVL9Q8NBF6 648 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 NEXN-AS1Q8NBZ9 246 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 HMGCLL1Q8TB92 370 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 OIT3Q8WWZ8 545 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 APBB2Q92870 758 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ORAI1Q96D31 301 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 NUDCD1Q96RS6 583 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 KXD1Q9BQD3 176 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 KIFC3Q9BVG8 833 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 RBM38Q9H0Z9 239 aaKnown RBP4.13□□□□□ -1.75
VPS29-205ENST00000548539 DNAJC18Q9H819 358 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 MMP25Q9NPA2 562 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 TAB2Q9NYJ8 693 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 MDFICQ9P1T7 246 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 MORF4L1Q9UBU8 362 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 TINAGQ9UJW2 476 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 FZD10Q9ULW2 581 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 ZNF711Q9Y462 761 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 SQORQ9Y6N5 450 aa4.13□□□□□ -1.75
VPS29-205ENST00000548539 IGHV4-28A0A0C4DH34 117 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 hDV102S1A0JD36 115 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 M0QZ24 198 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 SPRY3O43610 288 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 PLPP2O43688 288 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 AVILO75366 819 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 SOX30O94993 753 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 BCL10O95999 233 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 APOA4P06727 396 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 TRIM21P19474 475 aaKnown RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 UBA1P22314 1058 aaKnown RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 HOXC9P31274 260 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 STX2P32856 288 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 MXI1P50539 228 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 PPP5CP53041 499 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 PNLIPRP2P54317 469 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 PPP2R2BQ00005 443 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 SREBF2Q12772 1141 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 AIMP1Q12904 312 aaKnown RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 ZNF628Q5EBL2 1059 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 KRT74Q7RTS7 529 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CACNA2D4Q7Z3S7 1137 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 TSPAN33Q86UF1 283 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CCDC190Q86UF4 302 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 ARID3BQ8IVW6 561 aaPredicted RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 TMTC2Q8N394 836 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 OR1J2Q8NGS2 313 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 HM13Q8TCT9 377 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 MOAP1Q96BY2 351 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CCDC34Q96HJ3 373 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CNDP2Q96KP4 475 aaKnown RBP4.12□□□□□ -1.75
VPS29-205ENST00000548539 CEP295NLQ96MC4 621 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CTAGE1Q96RT6 745 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 SMC6Q96SB8 1091 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 FIZ1Q96SL8 496 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 C1QTNF1Q9BXJ1 281 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 HIPK2Q9H2X6 1198 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 OSGEPL1Q9H4B0 414 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 EPB41L5Q9HCM4 733 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 NOX4Q9NPH5 578 aa4.12□□□□□ -1.75
VPS29-205ENST00000548539 CCDC177Q9NQR7 707 aaPredicted RBP4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms