RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 DUX1O43812 170 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 PRLP01236 227 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 ITGB2P05107 769 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 GPR89BP0CG08 455 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 CD1CP29017 333 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 CSTF2P33240 577 aaKnown RBP eCLIP13.02□□□□□ -0.33
RTN3-212ENST00000543123 LIMK2P53671 638 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 NIPAL4Q0D2K0 466 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 AP1B1Q10567 949 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 C16orf72Q14CZ0 275 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 ASTE1Q2TB18 679 aaPredicted RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 HENMT1Q5T8I9 393 aaKnown RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 LRRC38Q5VT99 294 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 RFLNAQ6ZTI6 216 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 BZW1Q7L1Q6 419 aaKnown RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 TMPRSS9Q7Z410 1059 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 PHYKPLQ8IUZ5 450 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 SFRP1Q8N474 314 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 SLC35G2Q8TBE7 412 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 PTCD2Q8WV60 388 aaKnown RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 PATE1Q8WXA2 126 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 RAPGEF5Q92565 580 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 MED8Q96G25 268 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 CCDC74BQ96LY2 380 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 TAAR9Q96RI9 348 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 SRPK1Q96SB4 655 aaKnown RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 SLC38A3Q99624 504 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 HERPUD2Q9BSE4 406 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 ASPSCR1Q9BZE9 553 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 ABHD10Q9NUJ1 306 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 DDX56Q9NY93 547 aaKnown RBP13.02□□□□□ -0.33
RTN3-212ENST00000543123 PIEZO2Q9H5I5 2752 aa13.02□□□□□ -0.33
RTN3-212ENST00000543123 COL6A6A6NMZ7 2263 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 IGHV1OR21-1A0A087WYE8 117 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 A0A0U1RQS6 177 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 C9orf172C9J069 976 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 MTA2O94776 668 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 KRT1P04264 644 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 ETV5P41161 510 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 SLC1A1P43005 524 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 TNNT3P45378 269 aaPredicted RBP13.01□□□□□ -0.33
RTN3-212ENST00000543123 ATP1A2P50993 1020 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 RAB15P59190 212 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 HHEXQ03014 270 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 SLC10A2Q12908 348 aaPredicted RBP13.01□□□□□ -0.33
RTN3-212ENST00000543123 SLC14A2Q15849 920 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 QPCTQ16769 361 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 ZNF569Q5MCW4 686 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 KIAA1614Q5VZ46 1190 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 PDPK2PQ6A1A2 396 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 SLC9A4Q6AI14 798 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 CCDC70Q6NSX1 233 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 NT5DC3Q86UY8 548 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 CPNE8Q86YQ8 564 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 CNGA4Q8IV77 575 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 PLD5Q8N7P1 536 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 SLC37A2Q8TED4 501 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 SMIM14Q96QK8 99 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 AGAP2Q99490 1192 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 ZSCAN5AQ9BUG6 496 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 DDA1Q9BW61 102 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.01□□□□□ -0.33
RTN3-212ENST00000543123 CARD9Q9H257 536 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 EPB41L1Q9H4G0 881 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 ZFYVE1Q9HBF4 777 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 FOXJ2Q9P0K8 574 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 PCDHGA3Q9Y5H0 932 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 ST14Q9Y5Y6 855 aa13.01□□□□□ -0.33
RTN3-212ENST00000543123 KIR2DS5A0A0G2JLQ3 304 aa13□□□□□ -0.33
RTN3-212ENST00000543123 A0A0G2JNG1 304 aa13□□□□□ -0.33
RTN3-212ENST00000543123 OR5K4A6NMS3 321 aa13□□□□□ -0.33
RTN3-212ENST00000543123 KIR2DS3K7RE56 304 aa13□□□□□ -0.33
RTN3-212ENST00000543123 AGRPO00253 132 aa13□□□□□ -0.33
RTN3-212ENST00000543123 PPM1DO15297 605 aa13□□□□□ -0.33
RTN3-212ENST00000543123 EFSO43281 561 aa13□□□□□ -0.33
RTN3-212ENST00000543123 MFAP3LO75121 409 aa13□□□□□ -0.33
RTN3-212ENST00000543123 ATP1A1P05023 1023 aaKnown RBP13□□□□□ -0.33
RTN3-212ENST00000543123 MMP2P08253 660 aa13□□□□□ -0.33
RTN3-212ENST00000543123 THRAP10827 490 aa13□□□□□ -0.33
RTN3-212ENST00000543123 PLA2G2AP14555 144 aa13□□□□□ -0.33
RTN3-212ENST00000543123 DCDC1P59894 354 aa13□□□□□ -0.33
RTN3-212ENST00000543123 ZBTB17Q13105 803 aa13□□□□□ -0.33
RTN3-212ENST00000543123 TFDP2Q14188 446 aa13□□□□□ -0.33
RTN3-212ENST00000543123 LY6DQ14210 128 aa13□□□□□ -0.33
RTN3-212ENST00000543123 GALNT3Q14435 633 aa13□□□□□ -0.33
RTN3-212ENST00000543123 IHHQ14623 411 aa13□□□□□ -0.33
RTN3-212ENST00000543123 KIR2DS5Q14953 304 aa13□□□□□ -0.33
RTN3-212ENST00000543123 TGIF1Q15583 401 aa13□□□□□ -0.33
RTN3-212ENST00000543123 TMEM71Q6P5X7 295 aa13□□□□□ -0.33
RTN3-212ENST00000543123 WDR74Q6RFH5 385 aaPredicted RBP13□□□□□ -0.33
RTN3-212ENST00000543123 CHST15Q7LFX5 561 aaPredicted RBP13□□□□□ -0.33
RTN3-212ENST00000543123 LYSMD3Q7Z3D4 306 aa13□□□□□ -0.33
RTN3-212ENST00000543123 SLC9B2Q86UD5 537 aa13□□□□□ -0.33
RTN3-212ENST00000543123 ZFAND4Q86XD8 727 aa13□□□□□ -0.33
RTN3-212ENST00000543123 RFX6Q8HWS3 928 aa13□□□□□ -0.33
RTN3-212ENST00000543123 VSTM4Q8IW00 320 aa13□□□□□ -0.33
RTN3-212ENST00000543123 RHOT1Q8IXI2 618 aa13□□□□□ -0.33
RTN3-212ENST00000543123 RCBTB1Q8NDN9 531 aa13□□□□□ -0.33
RTN3-212ENST00000543123 IMP4Q96G21 291 aaKnown RBP13□□□□□ -0.33
RTN3-212ENST00000543123 AGAP3Q96P47 875 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms