RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FAM46DQ8NEK8 389 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 OR6C4Q8NGE1 309 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 SLC35B2Q8TB61 432 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 MAPK15Q8TD08 544 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 DTX3LQ8TDB6 740 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 CCDC3Q9BQI4 270 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 ZSCAN5AQ9BUG6 496 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 TRABDQ9H4I3 376 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 GOLGA6AQ9NYA3 693 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 SIRPGQ9P1W8 387 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 RSPH14Q9UHP6 348 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 APPL1Q9UKG1 709 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 TMPRSS11EQ9UL52 423 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 DOLKQ9UPQ8 538 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 R3HDM2Q9Y2K5 976 aaKnown RBP14.09□□□□□ -0.15
USP28-209ENST00000540925 PCDHB1Q9Y5F3 818 aa14.09□□□□□ -0.15
USP28-209ENST00000540925 ACACAQ13085 2346 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 A0A1W2PNU3 283 aaPredicted RBP14.08□□□□□ -0.16
USP28-209ENST00000540925 F5H423 210 aaPredicted RBP14.08□□□□□ -0.16
USP28-209ENST00000540925 INPP4BO15327 924 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 KRT86O43790 486 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 PNLIPP16233 465 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 HLA-DPA1P20036 260 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 AK4P27144 223 aaPredicted RBP14.08□□□□□ -0.16
USP28-209ENST00000540925 CYP4F3Q08477 520 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 ILF3Q12906 894 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP28-209ENST00000540925 NR1D2Q14995 579 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 C14orf28Q4W4Y0 310 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 CCDC181Q5TID7 509 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 DOK6Q6PKX4 331 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 RANBP10Q6VN20 620 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 ZNF438Q7Z4V0 828 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 TRAM1L1Q8N609 369 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 WDR48Q8TAF3 677 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 CCDC74AQ96AQ1 378 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 NXPE2Q96DL1 559 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 SPATA13Q96N96 652 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 PLEKHG4BQ96PX9 1271 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 DEPDC7Q96QD5 511 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 OR2M4Q96R27 311 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 GSDMCQ9BYG8 508 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 RAD18Q9NS91 495 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 IL17CQ9P0M4 197 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 TAAR2Q9P1P5 351 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 GULP1Q9UBP9 304 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 MOSPD1Q9UJG1 213 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 GUCA1BQ9UMX6 200 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 PLEKHM1Q9Y4G2 1056 aa14.08□□□□□ -0.16
USP28-209ENST00000540925 LOC400499M0QZD8 3231 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 A0A1W2PQM1 296 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 C5orf60A6NFR6 353 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 GAPDHSO14556 408 aaPredicted RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 KCNN4O15554 427 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 NUDT21O43809 227 aaKnown RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 CSO75390 466 aaKnown RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 ZNF189O75820 626 aaPredicted RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 ANXA9O76027 345 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 ATP1A1P05023 1023 aaKnown RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 GLB1P16278 677 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 PSMB4P28070 264 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 GEMP55040 296 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 LRP8Q14114 963 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 ISXQ2M1V0 245 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 MEI1Q5TIA1 1274 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 ITPRIPL1Q6GPH6 555 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 DENND5AQ6IQ26 1287 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 CCDC70Q6NSX1 233 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 DARS2Q6PI48 645 aaKnown RBP14.07□□□□□ -0.16
USP28-209ENST00000540925 TTC13Q8NBP0 860 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 IPMKQ8NFU5 416 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 CCDC110Q8TBZ0 833 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 GRAMD1AQ96CP6 724 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 RTP4Q96DX8 246 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 VPS35Q96QK1 796 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 GPR63Q9BZJ6 419 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 CARD9Q9H257 536 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 RMI1Q9H9A7 625 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 HACD3Q9P035 362 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 RNF215Q9Y6U7 377 aa14.07□□□□□ -0.16
USP28-209ENST00000540925 ZNF106Q9H2Y7 1883 aaKnown RBP14.06□□□□□ -0.16
USP28-209ENST00000540925 ZFC3H1O60293 1989 aaKnown RBP14.06□□□□□ -0.16
USP28-209ENST00000540925 A6NCN8 305 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 PRR19A6NJB7 356 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 B4DGG1 531 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GPR89AB7ZAQ6 455 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 CHUKO15111 745 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 NUAK1O60285 661 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 AGTP01019 485 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GPR89BP0CG08 455 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GDF10P55107 478 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 OASLQ15646 514 aaKnown RBP14.06□□□□□ -0.16
USP28-209ENST00000540925 ZNF569Q5MCW4 686 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 ALS2CLQ60I27 953 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 KCTD11Q693B1 232 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 SLC30A9Q6PML9 568 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 RBM44Q6ZP01 1051 aaKnown RBP14.06□□□□□ -0.16
USP28-209ENST00000540925 SPRED1Q7Z699 444 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GALNT13Q8IUC8 556 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 NAGSQ8N159 534 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 SLC25A41Q8N5S1 370 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms