RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 FNDC3AQ9Y2H6 1198 aaKnown RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 NDUFAF1Q9Y375 327 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 TET1Q8NFU7 2136 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 A0A1B0GTL3 188 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SMIM31A0A1B0GVY4 71 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 LCHNA4D1U4 455 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ZNF839A8K0R7 811 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 KDELR3O43731 214 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ECI2O75521 394 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 GRIA3P42263 894 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 CDKN1CP49918 316 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 TAF1AQ15573 450 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 PTPRNQ16849 979 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 C5orf22Q49AR2 442 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SETMARQ53H47 684 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 MTX3Q5HYI7 312 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ANKS6Q68DC2 871 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 PRSS55Q6UWB4 352 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 AMIGO2Q86SJ2 522 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 PHYKPLQ8IUZ5 450 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 LPCAT1Q8NF37 534 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ZNF512Q96ME7 567 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 PRPF18Q99633 342 aaKnown RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 MAP10Q9P2G4 905 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 IKZF3Q9UKT9 509 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 MED16Q9Y2X0 877 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ZFC3H1O60293 1989 aaKnown RBP13.08□□□□□ -0.31
LDLR-203ENST00000535915 CDC7O00311 574 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 BTN3A1O00481 513 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 GJB5O95377 273 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 IMPDH2P12268 514 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 ATP6V1B1P15313 513 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 CAPN3P20807 821 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 RPL5P46777 297 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 ATP6V0D1P61421 351 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 ECT2LQ008S8 904 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 SMARCB1Q12824 385 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 NCSTNQ92542 709 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 CASD1Q96PB1 797 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 HOPXQ9BPY8 73 aaPredicted RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 ZBED2Q9BTP6 218 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 NOL11Q9H8H0 719 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 NDUFA13Q9P0J0 144 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 CNOT6Q9ULM6 557 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 TIMM22Q9Y584 194 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 PCDHGC4Q9Y5F7 938 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 MYOCOSA0A1B0GUC4 107 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 NPEPPSL1A6NEC2 478 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 SYCE1LA8MT33 242 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 H7C4K7 107 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 CBX4O00257 560 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 NME4O00746 187 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 TFAP2AP05549 437 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 RHOCP08134 193 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 COL6A1P12109 1028 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 PSMC3P17980 439 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 LRRC8DQ7L1W4 858 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 TAS1R1Q7RTX1 841 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 OR2T34Q8NGX1 318 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 OR2T3Q8NH03 318 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 DUS3LQ96G46 650 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 PRICKLE1Q96MT3 831 aaPredicted RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 CDK5RAP1Q96SZ6 601 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 TCF12Q99081 682 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 CIB1Q99828 191 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 TDRD1Q9BXT4 1180 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 MRPS26Q9BYN8 205 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 GALPQ9UBC7 116 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 AGO1Q9UL18 857 aaKnown RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 LRFN2Q9ULH4 789 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 ARIH1Q9Y4X5 557 aaPredicted RBP13.08□□□□□ -0.32
LDLR-203ENST00000535915 COMMD3-BMI1R4GMX3 469 aa13.08□□□□□ -0.32
LDLR-203ENST00000535915 C7orf72A4D263 438 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ENPP3O14638 875 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 TBC1D4O60343 1298 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 TIPRLO75663 272 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 IKBKEQ14164 716 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 CAPRIN1Q14444 709 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 ANKS3Q6ZW76 656 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 TMEM173Q86WV6 379 aaPredicted RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 DBF4BQ8NFT6 615 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 FUBP1Q96AE4 644 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 GPATCH1Q9BRR8 931 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 ZNF696Q9H7X3 374 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 VCX3AQ9NNX9 186 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ABT1Q9ULW3 272 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 SLC4A7Q9Y6M7 1214 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 H3BNC9 293 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 AKAP10O43572 662 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 CLDN11O75508 207 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 PRLP01236 227 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 IDO1P14902 403 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 CR2P20023 1033 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ATP6V1B2P21281 511 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 LPOP22079 712 aaPredicted RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 MC4RP32245 332 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 AGTR2P50052 363 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 SGSHP51688 502 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ZNF177Q13360 481 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms