RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SYNDIG1Q9H7V2 258 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 UBP1Q9NZI7 540 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.46■□□□□ 0.87
VPS28-206ENST00000526734 LRIT1Q9P2V4 623 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 CNOT6Q9ULM6 557 aaKnown RBP20.46■□□□□ 0.87
VPS28-206ENST00000526734 SHOC2Q9UQ13 582 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 ENTPD2Q9Y5L3 495 aa20.46■□□□□ 0.87
VPS28-206ENST00000526734 FADS2P1A8MWK0 482 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 D6RAR5 112 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 FGF1P05230 155 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 RPLP0P05388 317 aaKnown RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 PTMAP06454 111 aaKnown RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 PIRTP0C851 137 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 RBP3P10745 1247 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 PYGMP11217 842 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 HMGCLP35914 325 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 ACTR1BP42025 376 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 ACTR1AP61163 376 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 GABREP78334 506 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 EIF3IQ13347 325 aaKnown RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 TBC1D25Q3MII6 688 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 SLC30A9Q6PML9 568 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 ZNF438Q7Z4V0 828 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 PHYKPLQ8IUZ5 450 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 CCDC112Q8NEF3 446 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 FGF11Q92914 225 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 LRRC45Q96CN5 670 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 EID2BQ96D98 161 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 LIN37Q96GY3 246 aaPredicted RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 OXNAD1Q96HP4 312 aaPredicted RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 TMEM74Q96NL1 305 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 DESI2Q9BSY9 194 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 LRRN3Q9H3W5 708 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 SPATS2LQ9NUQ6 558 aaKnown RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 AAR2Q9Y312 384 aaKnown RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 PCDHGA8Q9Y5G5 932 aa20.45■□□□□ 0.86
VPS28-206ENST00000526734 ANKRD11Q6UB99 2663 aaPredicted RBP20.45■□□□□ 0.86
VPS28-206ENST00000526734 PKD1L2Q7Z442 2459 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 CCDC187A0A096LP49 1063 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 RRP8O43159 456 aaKnown RBP20.44■□□□□ 0.86
VPS28-206ENST00000526734 KRT86O43790 486 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 DNAJC6O75061 913 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 PPFIA2O75334 1257 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 AK4P27144 223 aaPredicted RBP20.44■□□□□ 0.86
VPS28-206ENST00000526734 ERVPABLB-1P60509 514 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 BIRC2Q13490 618 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 PRPSAP1Q14558 356 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 NR1D2Q14995 579 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 SLC1A5Q15758 541 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 MARK2Q7KZI7 788 aaKnown RBP20.44■□□□□ 0.86
VPS28-206ENST00000526734 SPRED1Q7Z699 444 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 GPR26Q8NDV2 337 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 WDR36Q8NI36 951 aaKnown RBP20.44■□□□□ 0.86
VPS28-206ENST00000526734 PTCD2Q8WV60 388 aaKnown RBP20.44■□□□□ 0.86
VPS28-206ENST00000526734 MRGPRX2Q96LB1 330 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 HERPUD2Q9BSE4 406 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 STRADBQ9C0K7 418 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 RABGEF1Q9UJ41 708 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 RNF215Q9Y6U7 377 aa20.44■□□□□ 0.86
VPS28-206ENST00000526734 MYLKQ15746 1914 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 RHPN2P1A8MT19 583 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 ARHGAP6O43182 974 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 SLC4A1P02730 911 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 SLC2A4P14672 509 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 CCKBRP32239 447 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 GPR3P46089 330 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 CCL7P80098 99 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 SIRPB2Q5JXA9 342 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 ALS2CLQ60I27 953 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 DARS2Q6PI48 645 aaKnown RBP20.43■□□□□ 0.86
VPS28-206ENST00000526734 IPMKQ8NFU5 416 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 GLYATL1Q969I3 302 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 ATXN7L3BQ96GX2 97 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 VPS35Q96QK1 796 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 TRIM39Q9HCM9 518 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 THSD1Q9NS62 852 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 TRIM10Q9UDY6 481 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 ZNHIT2Q9UHR6 403 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 SPO11Q9Y5K1 396 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 OAS3Q9Y6K5 1087 aaKnown RBP20.43■□□□□ 0.86
VPS28-206ENST00000526734 ASXL3Q9C0F0 2248 aa20.43■□□□□ 0.86
VPS28-206ENST00000526734 A0A1W2PQM1 296 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 VEGFDO43915 354 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 NUAK1O60285 661 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 SLC25A14O95258 325 aaPredicted RBP20.42■□□□□ 0.86
VPS28-206ENST00000526734 ATP1A1P05023 1023 aaKnown RBP20.42■□□□□ 0.86
VPS28-206ENST00000526734 MPOP05164 745 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 BPIP17213 487 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 RBMS1P29558 406 aaKnown RBP20.42■□□□□ 0.86
VPS28-206ENST00000526734 PDX1P52945 283 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 ANKRD20A2Q5SQ80 823 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 ANKRD20A1Q5TYW2 823 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 ANKRD20A3Q5VUR7 823 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 LRRC69Q6ZNQ3 347 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 NAGSQ8N159 534 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 ARL14Q8N4G2 192 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 AVL9Q8NBF6 648 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 TMEM159Q96B96 161 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 HES6Q96HZ4 224 aa20.42■□□□□ 0.86
VPS28-206ENST00000526734 SPATA13Q96N96 652 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms