RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CNOT9Q92600 299 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 THRSPQ92748 146 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CORO2AQ92828 525 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASP10Q92851 521 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNASE1L2Q92874 299 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MR1Q95460 341 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB24Q969Q5 203 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEKT1Q969V4 418 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC59Q96AG4 307 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM125Q96AQ2 219 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARRDC3Q96B67 414 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM186Q96B77 213 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTERQ96BW5 349 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MOAP1Q96BY2 351 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL38Q96DV4 380 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RSPRY1Q96DX4 576 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPACA9Q96E40 222 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SGF29Q96ES7 293 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNFT2Q96EX2 444 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GIMAP5Q96F15 307 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PERPQ96FX8 193 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 C5orf30Q96GV9 206 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 REXO5Q96IC2 774 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 COG3Q96JB2 828 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLMNQ96JQ2 1002 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAR2Q96K12 515 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 C1orf74Q96LT6 269 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL15Q96M94 604 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM68Q96MH6 324 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC3BQ96PB8 259 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DGAT2Q96PD7 388 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NEK1Q96PY6 1258 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAM1Q96QH2 718 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HIST1H2AAQ96QV6 131 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR2A14Q96R47 310 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIB1Q96RU8 372 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR24Q96S15 920 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABHD1Q96SE0 405 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAP1L3Q99457 506 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLIN2Q99541 437 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF3CQ99613 913 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEPT5Q99719 369 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCT7Q99832 543 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SSX3Q99909 188 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PKP2Q99959 881 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAIP2Q9BPZ3 127 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLX1AQ9BQ83 275 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYT3Q9BQG1 590 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MGME1Q9BQP7 344 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLSTN3Q9BQT9 956 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZPBPQ9BS86 351 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM51Q9BSJ1 452 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYT17Q9BSW7 474 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 THUMPD2Q9BTF0 503 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 H2AFJQ9BTM1 129 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MECRQ9BV79 373 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBB2BQ9BVA1 445 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIFC3Q9BVG8 833 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTDSS2Q9BVG9 487 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 UTP14AQ9BVJ6 771 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HERC2P3Q9BVR0 1158 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NUP85Q9BW27 656 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPLQ9BXD5 320 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTRT3Q9BYD9 372 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP4-3Q9BYR4 195 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP1-5Q9BYS1 174 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACPTQ9BZG2 426 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM2Q9C040 744 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR88Q9GZN0 384 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS22Q9GZN4 317 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD2Q9GZV1 360 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC5A7Q9GZV3 580 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF350Q9GZX5 532 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 XRN2Q9H0D6 950 aaKnown RBP eCLIP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM38Q9H0Z9 239 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 STMN4Q9H169 189 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ISCUQ9H1K1 167 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCG8Q9H221 673 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPH5Q9H2P9 285 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FOXP1Q9H334 677 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HRH4Q9H3N8 390 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 R3HDMLQ9H3Y0 253 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RWDD1Q9H446 243 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ST6GALNAC4Q9H4F1 302 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RIBC2Q9H4K1 309 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC32A1Q9H598 525 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TFB2MQ9H5Q4 396 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPHX3Q9H6B9 360 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPAP3Q9H6T3 665 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LDAHQ9H6V9 325 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SUDS3Q9H7L9 328 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM206Q9H813 350 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJC18Q9H819 358 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC40Q9H9A6 602 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RMI1Q9H9A7 625 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCPEP1Q9HB40 452 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBRSL1Q9HCM7 1045 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TM9SF3Q9HD45 589 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUFT1Q9NNX1 390 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LTB4R2Q9NPC1 389 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms