RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ARMCX5Q6P1M9 558 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ZNF551Q7Z340 670 aaPredicted RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 GATAD2AQ86YP4 633 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 SFTPA1Q8IWL2 248 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 THEM5Q8N1Q8 247 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 FSIP1Q8NA03 581 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ENGASEQ8NFI3 743 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 PDCD6IPQ8WUM4 868 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 HVCN1Q96D96 273 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 AK8Q96MA6 479 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 SLC46A1Q96NT5 459 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ACO2Q99798 780 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 AMBRA1Q9C0C7 1298 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ST6GALNAC4Q9H4F1 302 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 CD93Q9NPY3 652 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 MRPS18AQ9NVS2 196 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 RGL1Q9NZL6 768 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 WRAP73Q9P2S5 460 aaPredicted RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 ODF2LQ9ULJ1 636 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 TBX20Q9UMR3 447 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 PCDHGA1Q9Y5H4 931 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 STAB1Q9NY15 2570 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 UBE4BO95155 1302 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 PDCD11Q14690 1871 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 RP1L1Q8IWN7 2480 aaPredicted RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 FBN1P35555 2871 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 TTC26A0AVF1 554 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 ARHGAP10A1A4S6 786 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 PRSS29PA6NIE9 313 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 MEI4A8MW99 385 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 VWC2LB2RUY7 222 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 QSOX1O00391 747 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 SLC9A3R1O14745 358 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 NPC1O15118 1278 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 B4GALT5O43286 388 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 USO1O60763 962 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 RTN2O75298 545 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 UNC5CO95185 931 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 NADKO95544 446 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 LDOC1O95751 146 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 GRPP07492 148 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 KRT7P08729 469 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CSH1P0DML2 217 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CSH2P0DML3 217 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 DRD4P21917 467 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 TKTP29401 623 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 AVPR1AP37288 418 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CSNK1EP49674 416 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 ACADVLP49748 655 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 MLLT10P55197 1068 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 LOXL3P58215 753 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 KRTAP10-11P60412 298 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 RPL10AP62906 217 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 CYP4F2P78329 520 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 SRSF6Q13247 344 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 ALCAMQ13740 583 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 IQCB1Q15051 598 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 POSTNQ15063 836 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 KIF19Q2TAC6 998 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CFAP221Q4G0U5 840 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 RILPL1Q5EBL4 403 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 FCRLBQ6BAA4 426 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CENPPQ6IPU0 288 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 IL27RAQ6UWB1 636 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CD300LGQ6UXG3 332 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 SLC29A4Q7RTT9 530 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 TRMT11Q7Z4G4 463 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 PPP1R32Q7Z5V6 425 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 METTL23Q86XA0 190 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 RAB11FIP4Q86YS3 637 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 DIS3L2Q8IYB7 885 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 DCP1BQ8IZD4 617 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 TMEM86AQ8N2M4 240 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 IL17RCQ8NAC3 791 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 ATP2A3Q93084 1043 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 GTF3C6Q969F1 213 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 MIB2Q96AX9 1013 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 OTUB2Q96DC9 234 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 C1GALT1C1Q96EU7 318 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 ZNF419Q96HQ0 510 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 CPB2Q96IY4 423 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CNDP2Q96KP4 475 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 ZSCAN31Q96LW9 406 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 TCEANC2Q96MN5 208 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CCNL2Q96S94 520 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 TCHPQ9BT92 498 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 TCF7L1Q9HCS4 588 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 GEMIN8Q9NWZ8 242 aaKnown RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 DONSONQ9NYP3 566 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 HESX1Q9UBX0 185 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 CCL26Q9Y258 94 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 PLEKHM1Q9Y4G2 1056 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 YIPF1Q9Y548 306 aa4.1□□□□□ -1.75
USP54-217ENST00000498213 MORC2Q9Y6X9 1032 aaPredicted RBP4.1□□□□□ -1.75
USP54-217ENST00000498213 TNRC6BQ9UPQ9 1833 aaKnown RBP4.09□□□□□ -1.75
USP54-217ENST00000498213 APCP25054 2843 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 E2F8A0AVK6 867 aa4.09□□□□□ -1.75
USP54-217ENST00000498213 TMEM150BA6NC51 233 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms