RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CNTD1Q8N815 330 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 CCHCR1Q8TD31 782 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 DPYSL5Q9BPU6 564 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 ADGRE3Q9BY15 652 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 ABHD10Q9NUJ1 306 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 WDR70Q9NW82 654 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 SEPT10Q9P0V9 454 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 CNOT6Q9ULM6 557 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 HEY1Q9Y5J3 304 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 IGHV1OR21-1A0A087WYE8 117 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 CYSRT1A8MQ03 144 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 C9orf172C9J069 976 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 MTA2O94776 668 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 CD82P27701 267 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 FASLGP48023 281 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 LIMK2P53671 638 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 TRA2AQ13595 282 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 VSTM4Q8IW00 320 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 RHOT2Q8IXI1 618 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 OR4D9Q8NGE8 314 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC37A2Q8TED4 501 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 CCDC74BQ96LY2 380 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 CHP1Q99653 195 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 MAK16Q9BXY0 300 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 FAM83DQ9H4H8 585 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 RMI1Q9H9A7 625 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 NHEJ1Q9H9Q4 299 aaPredicted RBP16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 SPTLC3Q9NUV7 552 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 KCNK4Q9NYG8 393 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 FOXJ2Q9P0K8 574 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 ZNHIT2Q9UHR6 403 aa16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 OAS3Q9Y6K5 1087 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-204ENST00000469003 FADS2P1A8MWK0 482 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 APOL1O14791 398 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 MFAP3LO75121 409 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 ATP1A1P05023 1023 aaKnown RBP16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 ZFXP17010 805 aaPredicted RBP16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 GPLD1P80108 840 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 AP1B1Q10567 949 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 LY6DQ14210 128 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 PDK1Q15118 436 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 SKOR2Q2VWA4 1001 aaPredicted RBP16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 TMEM164Q5U3C3 297 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 LRRC38Q5VT99 294 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 NKAIN2Q5VXU1 208 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 ZFAND4Q86XD8 727 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 SFRP1Q8N474 314 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 RCBTB1Q8NDN9 531 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 CCDC42Q96M95 316 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 OLFM3Q96PB7 478 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 SEMA4CQ9C0C4 833 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 PCYT1BQ9Y5K3 369 aaPredicted RBP16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 AHCTF1Q8WYP5 2266 aa16.43■□□□□ 0.22
CCDC28B-204ENST00000469003 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 PPP1R12AO14974 1030 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 KRT1P04264 644 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 THRAP10827 490 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 CCL4P13236 92 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 CSF2RBP32927 897 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 SRSF6Q13247 344 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 GALNT3Q14435 633 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 MANEAQ5SRI9 462 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 CHST15Q7LFX5 561 aaPredicted RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 LYSMD3Q7Z3D4 306 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 NT5DC3Q86UY8 548 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 DTX1Q86Y01 620 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 SGF29Q96ES7 293 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 IMP4Q96G21 291 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 TAAR9Q96RI9 348 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 TRIB3Q96RU7 358 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC38A3Q99624 504 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 BRD8Q9H0E9 1235 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 ZFYVE1Q9HBF4 777 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 PRKAB1Q9Y478 270 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 PCDHB11Q9Y5F2 797 aa16.42■□□□□ 0.22
CCDC28B-204ENST00000469003 TRBV23OR9-2A0A075B6M9 112 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 EML2O95834 649 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 FGF3P11487 239 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC1A1P43005 524 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC14A2Q15849 920 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 ODF2Q5BJF6 829 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 TMEM71Q6P5X7 295 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 NPNTQ6UXI9 565 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 RFX6Q8HWS3 928 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 RHOT1Q8IXI2 618 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 AGBL5Q8NDL9 886 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 OR10G6Q8NH81 332 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 TADA1Q96BN2 335 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 EID2BQ96D98 161 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 MED8Q96G25 268 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 AHCYL2Q96HN2 611 aaKnown RBP16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 AGAP3Q96P47 875 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 ANP32EQ9BTT0 268 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 CEP41Q9BYV8 373 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC25A51Q9H1U9 297 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 CARD9Q9H257 536 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 MAGEE1Q9HCI5 957 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 SARS2Q9NP81 518 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms