RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TTLL3Q9Y4R7 772 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 HEMK1Q9Y5R4 338 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 HELZ2Q9BYK8 2649 aaKnown RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 BOD1L1Q8NFC6 3051 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PIEZO2Q9H5I5 2752 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 IGHV1OR21-1A0A087WYE8 117 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 KIR2DS5A0A0G2JLQ3 304 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PRAMEF33A0A0G2JMD5 474 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 A0A0G2JNG1 304 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 IGHV5-10-1A0A0J9YXX1 117 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SSU72P8A0A1W2PR75 194 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SYCE3A1L190 88 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 B4E171 279 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 KIR2DS3K7RE56 304 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 EFSO43281 561 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 MTSS1O43312 755 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 MFSD11O43934 449 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 AKR1B10O60218 316 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PRAMEF10O60809 474 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 KCNJ13O60928 360 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 FUCA1P04066 466 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TMEM253P0C7T8 217 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TCF4P15884 667 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 KDELR1P24390 212 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 AK4P27144 223 aaPredicted RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 CASP14P31944 242 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TSPAN7P41732 249 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SLC1A1P43005 524 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 POLD2P49005 469 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 NR2C2P49116 596 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SPINT3P49223 89 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 CLCNKAP51800 687 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 EPHA4P54764 986 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 MAZP56270 477 aaKnown RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 IFI35P80217 286 aaPredicted RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 DSC2Q02487 901 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 HHEXQ03014 270 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PPIDQ08752 370 aaKnown RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 KIR2DS5Q14953 304 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SLC14A2Q15849 920 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 LRRC38Q5VT99 294 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 ZDHHC20Q5W0Z9 365 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TXNRD3NBQ6F5E7 133 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 DOK6Q6PKX4 331 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PCSK4Q6UW60 755 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 CEACAM20Q6UY09 585 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 LYSMD3Q7Z3D4 306 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TSPAN33Q86UF1 283 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 DTX1Q86Y01 620 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PHYKPLQ8IUZ5 450 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 NAGSQ8N159 534 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PELI3Q8N2H9 469 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SFRP1Q8N474 314 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 IL22RA1Q8N6P7 574 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 KIAA1143Q96AT1 154 aaPredicted RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 FAF2Q96CS3 445 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 BTBD6Q96KE9 485 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 CCDC42Q96M95 316 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 NSMCE3Q96MG7 304 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 CATSPER2Q96P56 530 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 RNF157Q96PX1 679 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 ZSCAN5AQ9BUG6 496 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 RIOK2Q9BVS4 552 aaKnown RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 CARD9Q9H257 536 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 ADNPQ9H2P0 1102 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SEMA6CQ9H3T2 930 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SUDS3Q9H7L9 328 aaPredicted RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 ZFYVE1Q9HBF4 777 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 RDH14Q9HBH5 336 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 MAGEE1Q9HCI5 957 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 TRIM39Q9HCM9 518 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SARS2Q9NP81 518 aaKnown RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 SLC39A1Q9NY26 324 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 DDX56Q9NY93 547 aaKnown RBP7.02□□□□□ -1.29
VPS41-208ENST00000448833 IFNKQ9P0W0 207 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 PDP2Q9P2J9 529 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 SDK2Q58EX2 2172 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 AHCTF1Q8WYP5 2266 aa7.02□□□□□ -1.29
VPS41-208ENST00000448833 CFAP46Q8IYW2 2715 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 C9orf172C9J069 976 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 APOL1O14791 398 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 PPM1DO15297 605 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 INPP4BO15327 924 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 TOX3O15405 576 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 GRID2O43424 1007 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 VEGFDO43915 354 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 MTA2O94776 668 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 SLC25A14O95258 325 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 CLDN7O95471 211 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 SOD1P00441 154 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 JCHAINP01591 159 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 GYPCP04921 128 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 CD48P09326 243 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 FGF3P11487 239 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 F3P13726 295 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 HGFP14210 728 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 VCLP18206 1134 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 ITIH1P19827 911 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 MAP4P27816 1152 aaKnown RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 GJC1P36383 396 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms