RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 WASF3Q9UPY6 502 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC27A6Q9Y2P4 619 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHGB2Q9Y5G2 931 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 UMODL1Q5DID0 1318 aa13.29□□□□□ -0.28
CCDC88A-204ENST00000413716 M0QX08 132 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TKTL1P51854 596 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 XRRA1Q6P2D8 792 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 RELL1Q8IUW5 271 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 LENG9Q96B70 501 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 POLR1EQ9GZS1 481 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 NXF3Q9H4D5 531 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TCOF1Q13428 1488 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CFL1P23528 166 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 GFOD2Q3B7J2 385 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TAPT1Q6NXT6 567 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC44A5Q8NCS7 719 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 RAB2BQ8WUD1 216 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CPDO75976 1380 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ADAMDEC1O15204 470 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TPH1P17752 444 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ECT2LQ008S8 904 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 PUS10Q3MIT2 529 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 MBOAT7Q96N66 472 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ATP7AQ04656 1500 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC1A2P43004 574 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CD83Q01151 205 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 PON3Q15166 354 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 GPR65Q8IYL9 337 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 FCGR1BQ92637 280 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 PIM2Q9P1W9 311 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 RCOR3Q9P2K3 495 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 UXTQ9UBK9 157 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CPSF4LA6NMK7 179 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TSTD3H0UI37 97 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 WFS1O76024 890 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 WSCD2Q2TBF2 565 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TOR1AIP1Q5JTV8 583 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ADAMTSL2Q86TH1 951 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CLPTM1LQ96KA5 538 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TBC1D10AQ9BXI6 508 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TMEM121BQ9BXQ6 578 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 BRINP2Q9C0B6 783 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ATP13A1Q9HD20 1204 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 GRIN2DO15399 1336 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 C2orf74A8MZ97 194 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 FPGTO14772 594 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 MASP1P48740 699 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 MB21D2Q8IYB1 491 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 OR6C70A6NIJ9 312 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 GMFGO60234 142 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ST3GAL4Q11206 333 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TLR1Q15399 786 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 NFE2Q16621 373 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 ECHDC2Q86YB7 292 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 CLIP4Q8N3C7 705 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 DPF2Q92785 391 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TMEM176AQ96HP8 235 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 EQTNQ9NQ60 294 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 TUBG2Q9NRH3 451 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 SNTG1Q9NSN8 517 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 NDUFAF4Q9P032 175 aa13.28□□□□□ -0.28
CCDC88A-204ENST00000413716 GJB7Q6PEY0 223 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 CENPSQ8N2Z9 138 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 GALNT15Q8N3T1 639 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 SETD4Q9NVD3 440 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 PLEKHA6Q9Y2H5 1048 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 FADS3Q9Y5Q0 445 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 FGF10O15520 208 aaPredicted RBP13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 ZMPSTE24O75844 475 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 CHMP24386 653 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 NPTX2P47972 431 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF135P52742 658 aaPredicted RBP13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 MXD1Q05195 221 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 TBCBQ99426 244 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 VAT1Q99536 393 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 DNMT3LQ9UJW3 386 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 GPSM3Q9Y4H4 160 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 AP1M2Q9Y6Q5 423 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 LRRIQ1Q96JM4 1722 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 LINC00032P0C843 101 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 HTR1BP28222 390 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 STXBP5Q5T5C0 1151 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 CYP2U1Q7Z449 544 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 SGMS1Q86VZ5 419 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 COQ8AQ8NI60 647 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 CELF6Q96J87 481 aaKnown RBP13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHGB7Q9Y5F8 929 aa13.27□□□□□ -0.28
CCDC88A-204ENST00000413716 ANGPTL1O95841 491 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 MAB21L1Q13394 359 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ASTE1Q2TB18 679 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 NUP54Q7Z3B4 507 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 GPR180Q86V85 440 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 BRSK1Q8TDC3 778 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 RXFP2Q8WXD0 754 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SEMA4AQ9H3S1 761 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 MAB21L2Q9Y586 359 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 GPATCH8Q9UKJ3 1502 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ZMYM2Q9UBW7 1377 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAJA2O60884 412 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms