RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ATP5OP48047 213 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 GABREP78334 506 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 ILF3Q12906 894 aaKnown RBP eCLIP18.91■□□□□ 0.62
SF3A1-202ENST00000411423 XRCC4Q13426 336 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 OLIG2Q13516 323 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 SIRPB2Q5JXA9 342 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 SLC25A41Q8N5S1 370 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 CCHCR1Q8TD31 782 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 CALR3Q96L12 384 aaKnown RBP18.91■□□□□ 0.62
SF3A1-202ENST00000411423 GSDMCQ9BYG8 508 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 LRRN3Q9H3W5 708 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 BPIFA1Q9NP55 256 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 LRIT1Q9P2V4 623 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 APPL1Q9UKG1 709 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 TMPRSS11EQ9UL52 423 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 ATXN7L1Q9ULK2 861 aaPredicted RBP18.91■□□□□ 0.62
SF3A1-202ENST00000411423 SATB2Q9UPW6 733 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 EFR3BQ9Y2G0 817 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 ADAMTS20P59510 1910 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 A0A087WV48 116 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 RGSL1A5PLK6 1076 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 MTSS1O43312 755 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 TCEA3O75764 348 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ASMTLO95671 621 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ITPKBP27987 946 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 B4GALNT1Q00973 533 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 COL28A1Q2UY09 1125 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 C3orf38Q5JPI3 329 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 SPRED1Q7Z699 444 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 CCNJLQ8IV13 435 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ARL14Q8N4G2 192 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 TTC30BQ8N4P2 665 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 DCBLD2Q96PD2 775 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 GPR63Q9BZJ6 419 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ASCL3Q9NQ33 180 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ATXN10Q9UBB4 475 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 NFKBIL1Q9UBC1 381 aaPredicted RBP18.9■□□□□ 0.62
SF3A1-202ENST00000411423 RSPH14Q9UHP6 348 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 ADGRG1Q9Y653 693 aa18.9■□□□□ 0.62
SF3A1-202ENST00000411423 CHD6Q8TD26 2715 aa18.89■□□□□ 0.62
SF3A1-202ENST00000411423 TCRBV7S2A1N4TA0A589 114 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 D6RAR5 112 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 B4GAT1O43505 415 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 PYGLP06737 847 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 EIF2S3P41091 472 aaKnown RBP18.89■□□□□ 0.61
SF3A1-202ENST00000411423 ACTR1BP42025 376 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 DCDC1P59894 354 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 EIF3EP60228 445 aaKnown RBP18.89■□□□□ 0.61
SF3A1-202ENST00000411423 ACTR1AP61163 376 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 SPIDRQ14159 915 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 TBC1D25Q3MII6 688 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 KHDC1Q4VXA5 237 aaKnown RBP18.89■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF438Q7Z4V0 828 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 IPMKQ8NFU5 416 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 VAT1Q99536 393 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 SPATA16Q9BXB7 569 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 FOXP3Q9BZS1 431 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 GBA3Q9H227 469 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 POLR1BQ9H9Y6 1135 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 VPS18Q9P253 973 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 AMFRQ9UKV5 643 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 R3HDM2Q9Y2K5 976 aaKnown RBP18.89■□□□□ 0.61
SF3A1-202ENST00000411423 KIF26BQ2KJY2 2108 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 ACACAQ13085 2346 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 LOC400499M0QZD8 3231 aa18.89■□□□□ 0.61
SF3A1-202ENST00000411423 PPM1DO15297 605 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 GPR39O43194 453 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 BUD23O43709 281 aaKnown RBP18.88■□□□□ 0.61
SF3A1-202ENST00000411423 NUDT21O43809 227 aaKnown RBP18.88■□□□□ 0.61
SF3A1-202ENST00000411423 MTX2O75431 263 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 AGTP01019 485 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 RBP3P10745 1247 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 PNLIPP16233 465 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF8P17098 575 aaPredicted RBP18.88■□□□□ 0.61
SF3A1-202ENST00000411423 LSSP48449 732 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 KIF5AQ12840 1032 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 SLC1A5Q15758 541 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 PEX26Q7Z412 305 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 ADGRG6Q86SQ4 1221 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 GALNT13Q8IUC8 556 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 TRAM1L1Q8N609 369 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 OR6C4Q8NGE1 309 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 SNIP1Q8TAD8 396 aaKnown RBP18.88■□□□□ 0.61
SF3A1-202ENST00000411423 GFM1Q96RP9 751 aaKnown RBP18.88■□□□□ 0.61
SF3A1-202ENST00000411423 CDH19Q9H159 772 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 ZNHIT2Q9UHR6 403 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 TRHDEQ9UKU6 1024 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 LHX6Q9UPM6 363 aa18.88■□□□□ 0.61
SF3A1-202ENST00000411423 TRBV23OR9-2A0A075B6M9 112 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 GAPDHSO14556 408 aaPredicted RBP18.87■□□□□ 0.61
SF3A1-202ENST00000411423 URB1O60287 2271 aaKnown RBP18.87■□□□□ 0.61
SF3A1-202ENST00000411423 DXOO77932 396 aaKnown RBP18.87■□□□□ 0.61
SF3A1-202ENST00000411423 EPOP01588 193 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 PSMB4P28070 264 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 OR1D5P58170 312 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 KLF1Q13351 362 aaPredicted RBP18.87■□□□□ 0.61
SF3A1-202ENST00000411423 PTPRCAPQ14761 206 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 ANKRD20A2Q5SQ80 823 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 CCDC181Q5TID7 509 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 ANKRD20A1Q5TYW2 823 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms