RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MARK4Q96L34 752 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 MED10Q9BTT4 135 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 TTPALQ9BTX7 342 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RAD21L1Q9H4I0 556 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 HMG20AQ9NP66 347 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 PKD2L2Q9NZM6 624 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 DNMT3BQ9UBC3 853 aaKnown RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 SLC27A5Q9Y2P5 690 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RAD54BQ9Y620 910 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 AQP12BA6NM10 295 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 TRPC5OSA6NMA1 111 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 SYN3O14994 580 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ACOX3O15254 700 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 EFCAB14O75071 495 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RASAL1O95294 804 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 PCSK1P29120 753 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CAPGP40121 348 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 PBX2P40425 430 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 OPRL1P41146 370 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 BCAT1P54687 386 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 GBE1Q04446 702 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ADIGQ0VDE8 80 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 BST2Q10589 180 aaKnown RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 SELENBP1Q13228 472 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 SF3B4Q15427 424 aaKnown RBP eCLIP11.1□□□□□ -0.635e-6■■■■□ 20.8
CUX1-204ENST00000393824 REP15Q6BDI9 236 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ZNF773Q6PK81 442 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RNF19BQ6ZMZ0 732 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 AQP12AQ8IXF9 295 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 KDM1BQ8NB78 822 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 LRRN4Q8WUT4 740 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 MOCOSQ96EN8 888 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ZNF558Q96NG5 402 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 C17orf80Q9BSJ5 609 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ACE2Q9BYF1 805 aaPredicted RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 WDR12Q9GZL7 423 aaKnown RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 KLHL25Q9H0H3 589 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ABI2Q9NYB9 513 aaPredicted RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 DSEQ9UL01 958 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RBMX2Q9Y388 322 aaKnown RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 NLRC5Q86WI3 1866 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 MYO9BQ13459 2157 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 KIAA1671Q9BY89 1806 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RNF103-CHMP3A0A140T963 221 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 SDHDO14521 159 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 TLL1O43897 1013 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 MYO1DO94832 1006 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 SBK3P0C264 359 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 POLR2IP36954 125 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 CCR10P46092 362 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 LEPRP48357 1165 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 CSRP3P50461 194 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 NAGLUP54802 743 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CSE1LP55060 971 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 SESN2P58004 480 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 IRF9Q00978 393 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CBX2Q14781 532 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 DDR2Q16832 855 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 HFE2Q6ZVN8 426 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 ITIH5Q86UX2 942 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 ZBTB46Q86UZ6 589 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 C11orf74Q86VG3 221 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 LRRC49Q8IUZ0 686 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 DHRSXQ8N5I4 330 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 SNX31Q8N9S9 440 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 HMGCLL1Q8TB92 370 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 SNX19Q92543 992 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 NRBF2Q96F24 287 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CENPNQ96H22 339 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 FBXL20Q96IG2 436 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CSF3RQ99062 836 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CLSTN3Q9BQT9 956 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 C11orf84Q9BUA3 381 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 SFMBT1Q9UHJ3 866 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 VPS51Q9UID3 782 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 POU2F3Q9UKI9 436 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 ANKRD6Q9Y2G4 727 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 FGF18O76093 207 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CLIC3O95833 236 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 FASP25445 335 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 ETFBP38117 255 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 RPL34P49207 117 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 GLUD2P49448 558 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 PITX1P78337 314 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 OCA2Q04671 838 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CYBRD1Q53TN4 286 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 TBCELQ5QJ74 424 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 TMTC4Q5T4D3 741 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 LRRC8EQ6NSJ5 796 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 BTLAQ7Z6A9 289 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 STRA8Q7Z7C7 330 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 BPHLQ86WA6 291 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 ANKRD13BQ86YJ7 626 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 PSTKQ8IV42 348 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 MMAAQ8IVH4 418 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 CYGBQ8WWM9 190 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CLP1Q92989 425 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 VMP1Q96GC9 406 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 CSPG4P5Q96PW8 444 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 HERC2P3Q9BVR0 1158 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms