RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 FTLP02792 175 aaPredicted RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ANXA7P20073 488 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 CAPGP40121 348 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 UBA7P41226 1012 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ID4P47928 161 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 HNRNPH2P55795 449 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 TBX4P57082 545 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 CSTF1Q05048 431 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 FAM27E3Q08E93 113 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 Q1RN00 199 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 C5orf22Q49AR2 442 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 TMEM196Q5HYL7 178 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 VWA5B1Q5TIE3 1220 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 KIAA1324Q6UXG2 1013 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF783Q6ZMS7 281 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 TMTC1Q8IUR5 882 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 SFTPA2Q8IWL1 248 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 CKAP2LQ8IYA6 745 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF34Q8IZ26 560 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 KIAA0319LQ8IZA0 1049 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 LGI3Q8N145 548 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 RTL3Q8N8U3 475 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 LINC00304Q8N9R0 145 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ARRDC2Q8TBH0 407 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ROBO4Q8WZ75 1007 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 OVCA2Q8WZ82 227 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ELSPBP1Q96BH3 223 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ERLEC1Q96DZ1 483 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 SMC6Q96SB8 1091 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 KXD1Q9BQD3 176 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 SRSF8Q9BRL6 282 aaKnown RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 PINK1Q9BXM7 581 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 FAM83DQ9H4H8 585 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZBTB20Q9HC78 741 aaPredicted RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 PANK4Q9NVE7 773 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ARL15Q9NXU5 204 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 POLG2Q9UHN1 485 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ACSL5Q9ULC5 683 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 PCDHB7Q9Y5E2 793 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 DCHS1Q96JQ0 3298 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 MYCBP2O75592 4640 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 SPG11Q96JI7 2443 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 HECTD4Q9Y4D8 3996 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 COL14A1Q05707 1796 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 F8P00451 2351 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 PTPRQQ9UMZ3 2332 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 FLT1P17948 1338 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 EIF3DO15371 548 aaKnown RBP eCLIP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNHIT1O43257 154 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 TGFB1I1O43294 461 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 KALRNO60229 2985 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 SHOX2O60902 331 aaPredicted RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 RASSF9O75901 435 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 TGDSO95455 350 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 RBMY1A1P0DJD3 496 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 BPIP17213 487 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 TPH1P17752 444 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 EGR1P18146 543 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 C5AR1P21730 350 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 OXTRP30559 389 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 MMP12P39900 470 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 LEPRP48357 1165 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 LIG4P49917 911 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 ILF2Q12905 390 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 RAB32Q13637 225 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 CIRBPQ14011 172 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 UAP1L1Q3KQV9 507 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 OR7E24Q6IFN5 339 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 RGMBQ6NW40 437 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 WDR93Q6P2C0 686 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 PSRC1Q6PGN9 363 aaPredicted RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 C16orf89Q6UX73 402 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 NECAB2Q7Z6G3 386 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 DGKHQ86XP1 1220 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 CLASRPQ8N2M8 674 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 MYCT1Q8N699 235 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 ACBD4Q8NC06 268 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 LINC01006Q8NI28 216 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 CENPTQ96BT3 561 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 DNAJA3Q96EY1 480 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 SLC35A4Q96G79 324 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 AHCYL2Q96HN2 611 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 CEP295NLQ96MC4 621 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 NEUROD6Q96NK8 337 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 EIF3CQ99613 913 aaKnown RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 MAPKAP1Q9BPZ7 522 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 NEURL2Q9BR09 285 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 C16orf70Q9BSU1 422 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 SLC25A39Q9BZJ4 359 aaPredicted RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 TUBB1Q9H4B7 451 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 IFT22Q9H7X7 185 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 SPHK2Q9NRA0 654 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 STAU2Q9NUL3 570 aaKnown RBP eCLIP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 TEX10Q9NXF1 929 aaPredicted RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 RCOR3Q9P2K3 495 aaPredicted RBP-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 DNAH1Q9P2D7 4330 aa-0.78□□□□□ -2.53
RNU6-540P-201ENST00000384622 KCPQ6ZWJ8 1503 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 UNC80Q8N2C7 3258 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 MST1RQ04912 1400 aa-0.79□□□□□ -2.54
RNU6-540P-201ENST00000384622 BOD1L1Q8NFC6 3051 aa-0.79□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms