RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ECEL1O95672 775 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 SLC4A1P02730 911 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 PYGMP11217 842 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 RBL1P28749 1068 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 PTPN7P35236 360 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 EIF2S3P41091 472 aaKnown RBP18.24■□□□□ 0.51
CLN3-202ENST00000355477 ATP5OP48047 213 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 MAZP56270 477 aaKnown RBP18.24■□□□□ 0.51
CLN3-202ENST00000355477 OTUD4Q01804 1114 aaKnown RBP18.24■□□□□ 0.51
CLN3-202ENST00000355477 XRCC4Q13426 336 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 TBC1D25Q3MII6 688 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 B3GNT8Q7Z7M8 397 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 CCNJLQ8IV13 435 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 ACTL9Q8TC94 416 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 FGF11Q92914 225 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 MRGPRX2Q96LB1 330 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 OR2M4Q96R27 311 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 FCRL5Q96RD9 977 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 FAM118BQ9BPY3 351 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 GPR63Q9BZJ6 419 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 ZNHIT2Q9UHR6 403 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 LHX6Q9UPM6 363 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 EFR3BQ9Y2G0 817 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 PRKAB1Q9Y478 270 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 MACROD2A1Z1Q3 448 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 NUDT21O43809 227 aaKnown RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 PNLIPP16233 465 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ITPKBP27987 946 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ACTN2P35609 894 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ACTR1BP42025 376 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 CHRNA4P43681 627 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 RWDD2BP57060 319 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ACTR1AP61163 376 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 C3orf38Q5JPI3 329 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 SIRPB2Q5JXA9 342 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ZNF648Q5T619 568 aaPredicted RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 CCDC181Q5TID7 509 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ALS2CLQ60I27 953 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 CCDC70Q6NSX1 233 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 SPRED1Q7Z699 444 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 GALNT13Q8IUC8 556 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 NAGSQ8N159 534 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 SNIP1Q8TAD8 396 aaKnown RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 GRAMD1AQ96CP6 724 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 PRR11Q96HE9 360 aaPredicted RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 GFM1Q96RP9 751 aaKnown RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 VAT1Q99536 393 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 SPATA16Q9BXB7 569 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 FOXP3Q9BZS1 431 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 CDH19Q9H159 772 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ARFGAP3Q9NP61 516 aa18.23■□□□□ 0.51
CLN3-202ENST00000355477 ATXN7L1Q9ULK2 861 aaPredicted RBP18.23■□□□□ 0.51
CLN3-202ENST00000355477 D6RAR5 112 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 B4GAT1O43505 415 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 DXOO77932 396 aaKnown RBP18.22■□□□□ 0.51
CLN3-202ENST00000355477 EPOP01588 193 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 BPIP17213 487 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 DCDC1P59894 354 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 B4GALNT1Q00973 533 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 ARL14Q8N4G2 192 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 SLC25A41Q8N5S1 370 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 CRELD1Q96HD1 420 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 GORASP1Q9BQQ3 440 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 BPIFA1Q9NP55 256 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 ASCL3Q9NQ33 180 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 VPS18Q9P253 973 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 TRHDEQ9UKU6 1024 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 AMFRQ9UKV5 643 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 PACSIN2Q9UNF0 486 aaPredicted RBP18.22■□□□□ 0.51
CLN3-202ENST00000355477 LOC400499M0QZD8 3231 aa18.22■□□□□ 0.51
CLN3-202ENST00000355477 MGAQ8IWI9 3026 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 EML2O95834 649 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 OR1D5P58170 312 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 EIF3EP60228 445 aaKnown RBP18.21■□□□□ 0.51
CLN3-202ENST00000355477 KIF5AQ12840 1032 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 CHST15Q7LFX5 561 aaPredicted RBP18.21■□□□□ 0.51
CLN3-202ENST00000355477 TMPRSS9Q7Z410 1059 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 PEX26Q7Z412 305 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 ZNF438Q7Z4V0 828 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 LSMEM2Q8N112 164 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 IPMKQ8NFU5 416 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 ZNF578Q96N58 590 aaPredicted RBP18.21■□□□□ 0.51
CLN3-202ENST00000355477 SLC46A1Q96NT5 459 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 ATXN10Q9UBB4 475 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 NFKBIL1Q9UBC1 381 aaPredicted RBP18.21■□□□□ 0.51
CLN3-202ENST00000355477 RSPH14Q9UHP6 348 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 TMPRSS11EQ9UL52 423 aa18.21■□□□□ 0.51
CLN3-202ENST00000355477 CACNA1GO43497 2377 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 TRBV23OR9-2A0A075B6M9 112 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 PPM1DO15297 605 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 DDX3YO15523 660 aaKnown RBP18.2■□□□□ 0.5
CLN3-202ENST00000355477 SLC25A14O95258 325 aaPredicted RBP18.2■□□□□ 0.5
CLN3-202ENST00000355477 FTCDO95954 541 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 AGTP01019 485 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 RBP3P10745 1247 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 ZNF8P17098 575 aaPredicted RBP18.2■□□□□ 0.5
CLN3-202ENST00000355477 MPP3Q13368 585 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 SLC1A5Q15758 541 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 FOXR1Q6PIV2 292 aa18.2■□□□□ 0.5
CLN3-202ENST00000355477 TTC30BQ8N4P2 665 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms