RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CHD5Q8TDI0 1954 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 A0A0A0MRY4 1105 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CDK2AP1O14519 115 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 MTSS1O43312 755 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 MAFKO60675 156 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CRYZL1O95825 349 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 GJA1P17302 382 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CDH4P55283 916 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 COPZ1P61923 177 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SELENBP1Q13228 472 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CES4AQ5XG92 561 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CDHR3Q6ZTQ4 885 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 IGFN1Q86VF2 1251 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 LGI2Q8N0V4 545 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CCDC138Q96M89 665 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SPATA13Q96N96 652 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RPRD1AQ96P16 312 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 PKP2Q99959 881 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 FOXP3Q9BZS1 431 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TOR3AQ9H497 397 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 DZANK1Q9NVP4 752 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SMPD4Q9NXE4 827 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RABGEF1Q9UJ41 708 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SHOC2Q9UQ13 582 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SPEF1Q9Y4P9 236 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 A8MV72 311 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TPPPO94811 219 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 MFN2O95140 757 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 MT-ND3P03897 115 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SOX11P35716 441 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CCT8P50990 548 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 KCNJ11Q14654 390 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TEAD2Q15562 447 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TTC39BQ5VTQ0 682 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SIGIRRQ6IA17 410 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 GRASPQ7Z6J2 395 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RELL1Q8IUW5 271 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 NUDCD3Q8IVD9 361 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CTAGE3PQ8IX95 158 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 PPIL6Q8IXY8 311 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 LILRA2Q8N149 483 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CPXM2Q8N436 756 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 PPP1R14CQ8TAE6 165 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 DDI1Q8WTU0 396 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CELF6Q96J87 481 aaKnown RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 SFXN1Q9H9B4 322 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF229Q9UJW7 825 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CDH23Q9H251 3354 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 CAPN14A8MX76 684 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RFXAPO00287 272 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF197O14709 1029 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 PRPF4O43172 522 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 NOL3O60936 208 aaKnown RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TSPAN9O75954 239 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ESRRGP62508 458 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 TNK2Q07912 1038 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ARHGAP15Q53QZ3 475 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RARS2Q5T160 578 aaKnown RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 GPR158Q5T848 1215 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 KLHDC8BQ8IXV7 354 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ZCCHC9Q8N567 271 aaKnown RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 FAM47BQ8NA70 645 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 LILRB4Q8NHJ6 448 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 BHMTQ93088 406 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 VAT1Q99536 393 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 KLHL3Q9UH77 587 aa10.08□□□□□ -0.8
SYNE1-203ENST00000354674 ZFP37Q9Y6Q3 630 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-203ENST00000354674 RNF103O00237 685 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 LEFTY2O00292 366 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CHADO15335 359 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 PEX11BO96011 259 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CKMP06732 381 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 GNAO1P09471 354 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 IRF1P10914 325 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF12P17014 697 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 PTPN3P26045 913 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 MAP4P27816 1152 aaKnown RBP10.07□□□□□ -0.8
SYNE1-203ENST00000354674 SGSHP51688 502 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 YBEYP58557 167 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-203ENST00000354674 PHC1P78364 1004 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 NTHL1P78549 312 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 LYPD8Q6UX82 237 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 ARHGAP36Q6ZRI8 547 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 ZNF567Q8N184 647 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CCNYQ8ND76 341 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 BRSK1Q8TDC3 778 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 SERAC1Q96JX3 654 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 TRIT1Q9H3H1 467 aaKnown RBP10.07□□□□□ -0.8
SYNE1-203ENST00000354674 GPAMQ9HCL2 828 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CCDC177Q9NQR7 707 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-203ENST00000354674 PCDHGA11Q9Y5H2 935 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 NUP210Q8TEM1 1887 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-203ENST00000354674 C7orf72A4D263 438 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 MATN3O15232 486 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CACNG3O60359 315 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CLDN11O75508 207 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 SCO1O75880 301 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 GLP2RO95838 553 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 ENPP1P22413 925 aa10.07□□□□□ -0.8
SYNE1-203ENST00000354674 CPOXP36551 454 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms