RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PERM1Q5SV97 790 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 HES3Q5TGS1 186 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 ALS2CLQ60I27 953 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 UNQ6494/PRO21346Q6UXR6 183 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 TAF8Q7Z7C8 310 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 TRABDQ9H4I3 376 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 BPIFA1Q9NP55 256 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 TRNAU1APQ9NX07 287 aaKnown RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 TRMT1Q9NXH9 659 aaKnown RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 GPR34Q9UPC5 381 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 AAR2Q9Y312 384 aaKnown RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 PLEKHM1Q9Y4G2 1056 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 CPED1A4D0V7 1026 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 METTL18O95568 372 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 AK4P27144 223 aaPredicted RBP15.7■□□□□ 0.1
CLN3-201ENST00000333496 ADCY8P40145 1251 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 E2F1Q01094 437 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 SIX1Q15475 284 aaPredicted RBP15.7■□□□□ 0.1
CLN3-201ENST00000333496 PYCR3Q53H96 274 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 EFL1Q7Z2Z2 1120 aaKnown RBP15.7■□□□□ 0.1
CLN3-201ENST00000333496 TRAM1L1Q8N609 369 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 ARL10Q8N8L6 244 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 KYQ8NBH2 561 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 FAM46DQ8NEK8 389 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 GPR156Q8NFN8 814 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 BLOC1S5Q8TDH9 187 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 SCG3Q8WXD2 468 aaKnown RBP15.7■□□□□ 0.1
CLN3-201ENST00000333496 GLMNQ92990 594 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 APOL2Q9BQE5 337 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 SPATA16Q9BXB7 569 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 CDH19Q9H159 772 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 NCKIPSDQ9NZQ3 722 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 IL17CQ9P0M4 197 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 GULP1Q9UBP9 304 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 PADI4Q9UM07 663 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 KIF26BQ2KJY2 2108 aa15.7■□□□□ 0.1
CLN3-201ENST00000333496 KIF2AO00139 706 aaPredicted RBP15.69■□□□□ 0.1
CLN3-201ENST00000333496 ZSCAN12O43309 604 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 LIASO43766 372 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 OPA1O60313 960 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 NOBOXO60393 691 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 DNAJC6O75061 913 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 ZNF189O75820 626 aaPredicted RBP15.69■□□□□ 0.1
CLN3-201ENST00000333496 TNNT3P45378 269 aaPredicted RBP15.69■□□□□ 0.1
CLN3-201ENST00000333496 CTBSQ01459 385 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 PRPSAP1Q14558 356 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 KCTD11Q693B1 232 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 DENND5AQ6IQ26 1287 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 OGFOD3Q6PK18 319 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 MARK2Q7KZI7 788 aaKnown RBP15.69■□□□□ 0.1
CLN3-201ENST00000333496 GLT6D1Q7Z4J2 308 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 REXO1L1PQ8IX06 675 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 C1orf54Q8WWF1 131 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 RTP4Q96DX8 246 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 ZSCAN5AQ9BUG6 496 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 ARFGAP3Q9NP61 516 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 RAD18Q9NS91 495 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 SPATS2LQ9NUQ6 558 aaKnown RBP15.69■□□□□ 0.1
CLN3-201ENST00000333496 EVA1BQ9NVM1 165 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 HACD3Q9P035 362 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 VPS18Q9P253 973 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 TMPRSS11EQ9UL52 423 aa15.69■□□□□ 0.1
CLN3-201ENST00000333496 BUD23O43709 281 aaKnown RBP15.68■□□□□ 0.1
CLN3-201ENST00000333496 USP12O75317 370 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ASMTLO95671 621 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 CAPNS1P04632 268 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 JUPP14923 745 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 RPIAP49247 311 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 SPARCL1Q14515 664 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 PTPRCAPQ14761 206 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 PARP6Q2NL67 630 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ZNF648Q5T619 568 aaPredicted RBP15.68■□□□□ 0.1
CLN3-201ENST00000333496 ARHGEF18Q6ZSZ5 1173 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 PLEKHG4BQ96PX9 1271 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 RABGEF1Q9UJ41 708 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 GPSM3Q9Y4H4 160 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 LAMA5O15230 3695 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 CTIFO43310 598 aaKnown RBP15.68■□□□□ 0.1
CLN3-201ENST00000333496 PROS1P07225 676 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 CXCR5P32302 372 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ILF3Q12906 894 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLN3-201ENST00000333496 TARDBPQ13148 414 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLN3-201ENST00000333496 CDCP2Q5VXM1 449 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 PDPK2PQ6A1A2 396 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 SLC30A9Q6PML9 568 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 CACTIN-AS1Q8N1I8 211 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 GLYATL1Q969I3 302 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 C16orf45Q96MC5 204 aaPredicted RBP15.68■□□□□ 0.1
CLN3-201ENST00000333496 OR2M4Q96R27 311 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 TBL1YQ9BQ87 522 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 GSDMCQ9BYG8 508 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 FRMD8P1Q9BZ68 369 aaPredicted RBP15.68■□□□□ 0.1
CLN3-201ENST00000333496 DPEP2Q9H4A9 486 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ARNT2Q9HBZ2 717 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 IL26Q9NPH9 171 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 TAAR2Q9P1P5 351 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ATXN10Q9UBB4 475 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 CLCA2Q9UQC9 943 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 PRKAB1Q9Y478 270 aa15.68■□□□□ 0.1
CLN3-201ENST00000333496 ARL5AQ9Y689 179 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms