RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PARNO95453 639 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ALPLP05186 524 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 SERPINB1P30740 379 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 CXCR3P49682 368 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 HMGCS2P54868 508 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 DNAJB13P59910 316 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 BNIP2Q12982 314 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 NOL9Q5SY16 702 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 PPP2R2DQ66LE6 453 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ARHGAP36Q6ZRI8 547 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 TFAP2DQ7Z6R9 452 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ADCK1Q86TW2 530 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 AKAP14Q86UN6 197 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 MMAAQ8IVH4 418 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 TUBGCP3Q96CW5 907 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 KIF12Q96FN5 646 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ZNF486Q96H40 463 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 RHNO1Q9BSD3 238 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 RNF38Q9H0F5 515 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 C2orf40Q9H1Z8 148 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 NOTOA8MTQ0 251 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 HGFP14210 728 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CPB1P15086 417 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 HADHAP40939 763 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TRPC1P48995 793 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 HNRNPFP52597 415 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ADIGQ0VDE8 80 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CDH17Q12864 832 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MXD4Q14582 209 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SPATC1Q76KD6 591 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TAS2R42Q7RTR8 314 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 PIM3Q86V86 326 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 HEATR4Q86WZ0 1026 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TBC1D21Q8IYX1 336 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 C8orf59Q8N0T1 100 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MIER2Q8N344 545 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 AFAP1L2Q8N4X5 818 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CNIH3Q8TBE1 160 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 STON2Q8WXE9 905 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ELMO1Q92556 727 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MUL1Q969V5 352 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TUBB1Q9H4B7 451 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MAGEB16A2A368 324 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SNPHO15079 494 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 DLGAP3O95886 979 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ATICP31939 592 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MATKP42679 507 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 PAFAH1B3Q15102 231 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 PSMD5Q16401 504 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 EFCAB12Q6NXP0 572 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TMEM207Q6UWW9 146 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CCDC81Q6ZN84 652 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ARMC8Q8IUR7 673 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 OR52K2Q8NGK3 314 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF419Q96HQ0 510 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 KIFC1Q9BW19 673 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 RMND5AQ9H871 391 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 GMIPQ9P107 970 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 H0YAE9 185 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 TBX1O43435 398 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CNTN5O94779 1100 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 FCGR1AP12314 374 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 RACK1P63244 317 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 RBP5P82980 135 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 EMX1Q04741 257 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 DAG1Q14118 895 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CBX2Q14781 532 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 UNC50Q53HI1 259 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 GPR158Q5T848 1215 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 PKN3Q6P5Z2 889 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 FAM83FQ8NEG4 500 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 REPS2Q8NFH8 660 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC2A14Q8TDB8 520 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SH3GL1Q99961 368 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CLSTN3Q9BQT9 956 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 BDH2Q9BUT1 245 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 CARS2Q9HA77 564 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 SPC25Q9HBM1 224 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 MID1IP1Q9NPA3 183 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 HPS4Q9NQG7 708 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 FAM118AQ9NWS6 357 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 PGAP2Q9UHJ9 254 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 ZNF639Q9UID6 485 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 FBXO10Q9UK96 956 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 BOLA1Q9Y3E2 137 aa13.39□□□□□ -0.27
CCDC88C-201ENST00000331194 COL11A1P12107 1806 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 CLDN5O00501 218 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 USP2O75604 605 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 BEST1O76090 585 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 C7P10643 843 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 PCMT1P22061 227 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 CD40LGP29965 261 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 ALDH3A2P51648 485 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 AAK1Q2M2I8 961 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 SLC25A52Q3SY17 297 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 TAF2Q6P1X5 1199 aa13.38□□□□□ -0.27
CCDC88C-201ENST00000331194 CYP2U1Q7Z449 544 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms