RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 MTDHQ86UE4 582 aaKnown RBP4□□□□□ -1.77
USH2A-201ENST00000307340 METTL6Q8TCB7 284 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ZSCAN5AQ9BUG6 496 aa4□□□□□ -1.77
USH2A-201ENST00000307340 KCNF1Q9H3M0 494 aa4□□□□□ -1.77
USH2A-201ENST00000307340 GRID2O43424 1007 aa4□□□□□ -1.77
USH2A-201ENST00000307340 LIASO43766 372 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PRLP01236 227 aa4□□□□□ -1.77
USH2A-201ENST00000307340 JAM2P57087 298 aa4□□□□□ -1.77
USH2A-201ENST00000307340 NSUN2Q08J23 767 aaKnown RBP eCLIP4□□□□□ -1.77
USH2A-201ENST00000307340 PROSER3Q2NL68 480 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TICAM1Q8IUC6 712 aa4□□□□□ -1.77
USH2A-201ENST00000307340 AZIN2Q96A70 460 aa4□□□□□ -1.77
USH2A-201ENST00000307340 C7orf50Q9BRJ6 194 aaKnown RBP4□□□□□ -1.77
USH2A-201ENST00000307340 ZIM2Q9NZV7 527 aa4□□□□□ -1.77
USH2A-201ENST00000307340 CLCA2Q9UQC9 943 aa4□□□□□ -1.77
USH2A-201ENST00000307340 F8VP50 259 aa4□□□□□ -1.77
USH2A-201ENST00000307340 KDELR1P24390 212 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TOR1AIP1Q5JTV8 583 aa4□□□□□ -1.77
USH2A-201ENST00000307340 LRRC17Q8N6Y2 441 aa4□□□□□ -1.77
USH2A-201ENST00000307340 RNPEPQ9H4A4 650 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ABI2Q9NYB9 513 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 ARHGAP20Q9P2F6 1191 aa4□□□□□ -1.77
USH2A-201ENST00000307340 CLDN4O14493 209 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PAPSS1O43252 624 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 IL1RNP18510 177 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ECI1P42126 302 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SLC7A2P52569 658 aa4□□□□□ -1.77
USH2A-201ENST00000307340 LIMK2P53671 638 aa4□□□□□ -1.77
USH2A-201ENST00000307340 RANBP3LQ86VV4 465 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 TRIM48Q8IWZ4 208 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TCP10LQ8TDR4 215 aa4□□□□□ -1.77
USH2A-201ENST00000307340 CDCA5Q96FF9 252 aa4□□□□□ -1.77
USH2A-201ENST00000307340 MGME1Q9BQP7 344 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TBC1D10AQ9BXI6 508 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SAV1Q9H4B6 383 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 EPB41L1Q9H4G0 881 aa4□□□□□ -1.77
USH2A-201ENST00000307340 EBF2Q9HAK2 575 aa4□□□□□ -1.77
USH2A-201ENST00000307340 MAFBQ9Y5Q3 323 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 ILVBLA1L0T0 632 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ERCC1P07992 297 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 ARFIP1P53367 373 aa4□□□□□ -1.77
USH2A-201ENST00000307340 AQP5P55064 265 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ZNF181Q2M3W8 571 aa4□□□□□ -1.77
USH2A-201ENST00000307340 EMC1Q8N766 993 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SCAIQ8N9R8 606 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ASB4Q9Y574 426 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ANKRD31Q8N7Z5 1873 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PHYHO14832 338 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ITGB3P05106 788 aa4□□□□□ -1.77
USH2A-201ENST00000307340 RB1P06400 928 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TSPAN19P0C672 248 aa4□□□□□ -1.77
USH2A-201ENST00000307340 MPIP34949 423 aa4□□□□□ -1.77
USH2A-201ENST00000307340 GNPDA1P46926 289 aa4□□□□□ -1.77
USH2A-201ENST00000307340 UGT2B15P54855 530 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SF3B4Q15427 424 aaKnown RBP eCLIP4□□□□□ -1.77
USH2A-201ENST00000307340 SLC22A10Q63ZE4 541 aa4□□□□□ -1.77
USH2A-201ENST00000307340 NELL1Q92832 810 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ZHX1-C8orf76Q96EF9 292 aa4□□□□□ -1.77
USH2A-201ENST00000307340 CNDP2Q96KP4 475 aaKnown RBP4□□□□□ -1.77
USH2A-201ENST00000307340 ZNF578Q96N58 590 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 AIF1LQ9BQI0 150 aa4□□□□□ -1.77
USH2A-201ENST00000307340 BRF2Q9HAW0 419 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ZNF446Q9NWS9 450 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ACTR3BQ9P1U1 418 aa4□□□□□ -1.77
USH2A-201ENST00000307340 RALGAPA2Q2PPJ7 1873 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ORC5O43913 435 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TDP2O95551 362 aa4□□□□□ -1.77
USH2A-201ENST00000307340 NR6A1Q15406 480 aa4□□□□□ -1.77
USH2A-201ENST00000307340 GID4Q8IVV7 300 aa4□□□□□ -1.77
USH2A-201ENST00000307340 BMFQ96LC9 184 aa4□□□□□ -1.77
USH2A-201ENST00000307340 FN3KQ9H479 309 aa4□□□□□ -1.77
USH2A-201ENST00000307340 FAM49BQ9NUQ9 324 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PFDN2Q9UHV9 154 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PLEKHA6Q9Y2H5 1048 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TRIM49BA6NDI0 452 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ARL6IP5O75915 188 aa4□□□□□ -1.77
USH2A-201ENST00000307340 APBB3O95704 486 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SLC4A1P02730 911 aa4□□□□□ -1.77
USH2A-201ENST00000307340 AMHP03971 560 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PRNPP04156 253 aa4□□□□□ -1.77
USH2A-201ENST00000307340 EPCAMP16422 314 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ATP5A1P25705 553 aaKnown RBP4□□□□□ -1.77
USH2A-201ENST00000307340 CD40LGP29965 261 aa4□□□□□ -1.77
USH2A-201ENST00000307340 HERVK_113P63132 956 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SLC8B1Q6J4K2 584 aa4□□□□□ -1.77
USH2A-201ENST00000307340 OAFQ86UD1 273 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TRABD2AQ86V40 505 aa4□□□□□ -1.77
USH2A-201ENST00000307340 EFCAB11Q9BUY7 163 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ERVK-6Q9BXR3 956 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ACE2Q9BYF1 805 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 SPIN1Q9Y657 262 aaPredicted RBP4□□□□□ -1.77
USH2A-201ENST00000307340 SPATA31C2B4DYI2 1134 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ADAMTS3O15072 1205 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PSMG1O95456 288 aa4□□□□□ -1.77
USH2A-201ENST00000307340 ERVK-24P63145 666 aa4□□□□□ -1.77
USH2A-201ENST00000307340 PON3Q15166 354 aa4□□□□□ -1.77
USH2A-201ENST00000307340 SEPT12Q8IYM1 358 aa4□□□□□ -1.77
USH2A-201ENST00000307340 C11orf65Q8NCR3 313 aa4□□□□□ -1.77
USH2A-201ENST00000307340 TEX47Q8TBZ9 253 aa4□□□□□ -1.77
USH2A-201ENST00000307340 RNF25Q96BH1 459 aaPredicted RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms