RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SIAEQ9HAT2 523 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CATSPERZQ9NTU4 200 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 AP4E1Q9UPM8 1137 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 C14orf166Q9Y224 244 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 TLL2Q9Y6L7 1015 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CAPN8A6NHC0 703 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 FAM220BPB1ANY3 271 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SPATA31C2B4DYI2 1134 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 DCXO43602 365 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GABBR2O75899 941 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 DHFRP00374 187 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 MYF6P23409 242 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GADD45AP24522 165 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 VARSP26640 1264 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 RGS19P49795 217 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 HNRNPFP52597 415 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 CYP4F8P98187 520 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ARHGAP15Q53QZ3 475 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 TCEAL5Q5H9L2 206 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 KLHL35Q6PF15 583 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 HAGHLQ6PII5 290 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 BEND5Q7L4P6 421 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 XYLT1Q86Y38 959 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RAB43Q86YS6 212 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 TICAM1Q8IUC6 712 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RAB42Q8N4Z0 105 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 AMER2Q8N7J2 671 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SLC16A10Q8TF71 515 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CHPT1Q8WUD6 406 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ARMC5Q96C12 935 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ZHX1-C8orf76Q96EF9 292 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 VPS35Q96QK1 796 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CRISPLD1Q9H336 500 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 TUBB1Q9H4B7 451 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GPN2Q9H9Y4 310 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 PTPRHQ9HD43 1115 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GTF2IRD1Q9UHL9 959 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 NUDT5Q9UKK9 219 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SARDHQ9UL12 918 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 KIF13BQ9NQT8 1826 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 H3BMM5 538 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 MID1O15344 667 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CYP7B1O75881 506 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CHRNGP07510 517 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 IKBKEQ14164 716 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 BTG3Q14201 252 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 KIAA0930Q6ICG6 404 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 ERAP2Q6P179 960 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RPTNQ6XPR3 784 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ZNF669Q96BR6 464 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 SLC39A3Q9BRY0 314 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 POLR3BQ9NW08 1133 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 COMMD8Q9NX08 183 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS35-201ENST00000299138 SNX6Q9UNH7 406 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 NUP98P52948 1817 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ATAD5Q96QE3 1844 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ONECUT3O60422 494 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 GSTM5P46439 218 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 UBXN2AP68543 259 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PPP2R2BQ00005 443 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PTPN20Q4JDL3 420 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 FNBP1LQ5T0N5 605 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SNRNP48Q6IEG0 339 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 DUS1LQ6P1R4 473 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 CYP2R1Q6VVX0 501 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RNF148Q8N7C7 305 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 OR6B3Q8NGW1 331 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 STYXQ8WUJ0 223 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RACGAP1Q9H0H5 632 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 TDRD3Q9H7E2 651 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 GPN1Q9HCN4 374 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 DPP3Q9NY33 737 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ACTR3BQ9P1U1 418 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 LEF1Q9UJU2 399 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 PPIEQ9UNP9 301 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 DGKBQ9Y6T7 804 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 A0A0J9YVX5 310 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 WTIPA6NIX2 430 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 KMOO15229 486 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 FGF10O15520 208 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 CD48P09326 243 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CDK4P11802 303 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF24P17028 368 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 RAB4AP20338 218 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CYP2F1P24903 491 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CAPGP40121 348 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 RPL6Q02878 288 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 PLD1Q13393 1074 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 IL18Q14116 193 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 GRB14Q14449 540 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ATF7IP2Q5U623 682 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 NCCRP1Q6ZVX7 275 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 ALYREFQ86V81 257 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 CHPFQ8IZ52 775 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 DSELQ8IZU8 1212 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ZNF557Q8N988 423 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 KBTBD8Q8NFY9 601 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 LIN37Q96GY3 246 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 HNRNPABQ99729 332 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms