RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLC16A12Q6ZSM3 486 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 SLC22A15Q8IZD6 547 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 SCML4Q8N228 414 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 PACRGLQ8N7B6 248 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 TERB1Q8NA31 727 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 FAR2Q96K12 515 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 C6orf62Q9GZU0 229 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 RNF38Q9H0F5 515 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 SCHIP1Q9P0W5 487 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 PDE10AQ9Y233 779 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 PCDHGA11Q9Y5H2 935 aa14.31□□□□□ -0.12
SDC1-201ENST00000254351 TIMM13Q9Y5L4 95 aaPredicted RBP14.31□□□□□ -0.12
SDC1-201ENST00000254351 ATICP31939 592 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 NPY2RP49146 381 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SIM2Q14190 667 aaPredicted RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 TECRLQ5HYJ1 363 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 AGAP9Q5VTM2 703 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 KCTD11Q693B1 232 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 GTF2IRD2BQ6EKJ0 949 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 UGT3A1Q6NUS8 523 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 GTF2IRD2Q86UP8 949 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 CCDC103Q8IW40 242 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 MICALL2Q8IY33 904 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 C11orf84Q9BUA3 381 aaPredicted RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 BDH2Q9BUT1 245 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 CPA4Q9UI42 421 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 ERVK-11Q9UQG0 969 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 DCLK1O15075 740 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SNPHO15079 494 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SEC24AO95486 1093 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 USP17L7P0C7H9 530 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 S100A1P23297 94 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 PRDX3P30048 256 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 KCNK10P57789 538 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 ADARB1P78563 741 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 KCNC4Q03721 635 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SELPLGQ14242 412 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 COLEC12Q5KU26 742 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 PLEKHG7Q6ZR37 379 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SYTL1Q8IYJ3 562 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 ITPKCQ96DU7 683 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 DHRS1Q96LJ7 313 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 DDX28Q9NUL7 540 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 IQCA1LA6NCM1 817 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 YJEFN3A6XGL0 299 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 CPNE6O95741 557 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 FADS2O95864 444 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 FTH1P02794 183 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 LTA4HP09960 611 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 PIRTP0C851 137 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 ADRA1BP35368 520 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 GP2P55259 537 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 CDKN2DP55273 166 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 CD47Q08722 323 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 CBLBQ13191 982 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 SMUG1Q53HV7 270 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 TMEM207Q6UWW9 146 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 LINC00523Q86TU6 105 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 AKAP14Q86UN6 197 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 PPHLN1Q8NEY8 458 aaKnown RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 DMRTB1Q96MA1 342 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 TBL1YQ9BQ87 522 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 RHOBTB2Q9BYZ6 727 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 FAM49AQ9H0Q0 323 aaPredicted RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 PLEKHA5Q9HAU0 1116 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 PAK1IP1Q9NWT1 392 aaPredicted RBP14.3□□□□□ -0.12
SDC1-201ENST00000254351 GDAP2Q9NXN4 497 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 OR12D3Q9UGF7 316 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 GJD2Q9UKL4 321 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 KCTD3Q9Y597 815 aa14.3□□□□□ -0.12
SDC1-201ENST00000254351 DYTNA2CJ06 578 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 NDUFS2O75306 463 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 UGT2B4P06133 528 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 SPNP16150 400 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TKTL1P51854 596 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 UGP2Q16851 508 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 LCN8Q6JVE9 175 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TAF2Q6P1X5 1199 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TMC5Q6UXY8 1006 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 FRA10AC1Q70Z53 315 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 GPC2Q8N158 579 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 ZUFSPQ96AP4 578 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TMEM125Q96AQ2 219 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 PTERQ96BW5 349 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 ROPN1LQ96C74 230 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 NSMCE2Q96MF7 247 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TUBB1Q9H4B7 451 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 NTN4Q9HB63 628 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 PDGFCQ9NRA1 345 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 INTS10Q9NVR2 710 aaKnown RBP14.29□□□□□ -0.12
SDC1-201ENST00000254351 TMEM9Q9P0T7 183 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 MAGEB16A2A368 324 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 CDK14O94921 469 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TGM1P22735 817 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 HK2P52789 917 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 RAB15P59190 212 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 CTF1Q16619 201 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 PCID2Q5JVF3 399 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 CELF3Q5SZQ8 465 aaKnown RBP14.29□□□□□ -0.12
SDC1-201ENST00000254351 RSBN1Q5VWQ0 802 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms