RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C1orf61Q13536 156 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 GPR26Q8NDV2 337 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 SCG3Q8WXD2 468 aaKnown RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 PDXPQ96GD0 296 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 WDR24Q96S15 920 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 AGAP2Q99490 1192 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 APOL2Q9BQE5 337 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 CAAP1Q9H8G2 361 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 ARNT2Q9HBZ2 717 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 MRPL40Q9NQ50 206 aaKnown RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 EVA1BQ9NVM1 165 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 ASXL3Q9C0F0 2248 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 C2orf81A6NN90 581 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 USP27XA6NNY8 438 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 PPFIA2O75334 1257 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 CEACAM5P06731 702 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 GIMD1P0DJR0 217 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 ALS2CLQ60I27 953 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 KCTD11Q693B1 232 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 PDPK2PQ6A1A2 396 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 ZCCHC8Q6NZY4 707 aaKnown RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 LVRNQ6Q4G3 990 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 GSTA5Q7RTV2 222 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 GKN2Q86XP6 184 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 PLEKHG4BQ96PX9 1271 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 OSBPL9Q96SU4 736 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 FRMD8Q9BZ67 464 aaPredicted RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 TTC7AQ9ULT0 858 aaPredicted RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 SLC17A4Q9Y2C5 497 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 PKP3Q9Y446 797 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 PTPRBP23467 1997 aa20.58■□□□□ 0.89
CLN3-240ENST00000631023 ERI2A8K979 691 aaKnown RBP20.58■□□□□ 0.88
CLN3-240ENST00000631023 INPP4BO15327 924 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 BPIP17213 487 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 CKMT2P17540 419 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 PDE1BQ01064 536 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 SPARCL1Q14515 664 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 DEFB133Q30KQ1 61 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 PROX2Q3B8N5 592 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 C4orf22Q6V702 233 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 LINC00523Q86TU6 105 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 TTC30BQ8N4P2 665 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 TRAM1L1Q8N609 369 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 PDCD7Q8N8D1 485 aaKnown RBP20.58■□□□□ 0.88
CLN3-240ENST00000631023 FAM181AQ8N9Y4 354 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 BRSK1Q8TDC3 778 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 GLMNQ92990 594 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 COX14Q96I36 57 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 CLPBQ9H078 707 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 BPIFA1Q9NP55 256 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 NCKIPSDQ9NZQ3 722 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 PAK5Q9P286 719 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 RP1P56715 2156 aa20.58■□□□□ 0.88
CLN3-240ENST00000631023 E7EVH7 732 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 CES2O00748 559 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 YY2O15391 372 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 USP12O75317 370 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 ASMTLO95671 621 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 CRTAMO95727 393 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 AP2A1O95782 977 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 CDK4P11802 303 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 LMAN1P49257 510 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 GNG11P61952 73 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 DAB2P98082 770 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 TAF1AQ15573 450 aaPredicted RBP20.57■□□□□ 0.88
CLN3-240ENST00000631023 DOK6Q6PKX4 331 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 TAB3Q8N5C8 712 aaPredicted RBP20.57■□□□□ 0.88
CLN3-240ENST00000631023 CARS2Q9HA77 564 aaKnown RBP20.57■□□□□ 0.88
CLN3-240ENST00000631023 ETNK1Q9HBU6 452 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 IL17CQ9P0M4 197 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 SNX12Q9UMY4 172 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 PCDHGA1Q9Y5H4 931 aa20.57■□□□□ 0.88
CLN3-240ENST00000631023 ZNF106Q9H2Y7 1883 aaKnown RBP20.57■□□□□ 0.88
CLN3-240ENST00000631023 FADS2P1A8MWK0 482 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 PGRMC1O00264 195 aaKnown RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 STX7O15400 261 aaKnown RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 IVLP07476 585 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 LPOP22079 712 aaPredicted RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 DUSP3P51452 185 aaPredicted RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 OLIG2Q13516 323 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 NYAP1Q6ZVC0 841 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 SLCO6A1Q86UG4 719 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 PRELID2Q8N945 189 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 MS4A14Q96JA4 679 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 APOLD1Q96LR9 279 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 TRNAU1APQ9NX07 287 aaKnown RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 TOR4AQ9NXH8 423 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 CNOT6Q9ULM6 557 aaKnown RBP20.56■□□□□ 0.88
CLN3-240ENST00000631023 SUFUQ9UMX1 484 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 TMEM98Q9Y2Y6 226 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-240ENST00000631023 MYLKQ15746 1914 aa20.56■□□□□ 0.88
CLN3-240ENST00000631023 SLC25A14O95258 325 aaPredicted RBP20.55■□□□□ 0.88
CLN3-240ENST00000631023 ETS1P14921 441 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 TCP1P17987 556 aaKnown RBP20.55■□□□□ 0.88
CLN3-240ENST00000631023 SPAM1P38567 509 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 GNPDA1P46926 289 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 POLD2P49005 469 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 FOXC1Q12948 553 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 DNAJC3Q13217 504 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms