RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 TSNAXIP1Q2TAA8 658 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 LDLRAP1Q5SW96 308 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PAPD7Q5XG87 772 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 ACSM2BQ68CK6 577 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CYP20A1Q6UW02 462 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 NAPRTQ6XQN6 538 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 HEATR4Q86WZ0 1026 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 SLC44A3Q8N4M1 653 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 STAG3L4Q8TBR4 150 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CLP1Q92989 425 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 RAD51AP1Q96B01 352 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 LRRC39Q96DD0 335 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 MTFMTQ96DP5 389 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 QKIQ96PU8 341 aaKnown RBP eCLIP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 STRA6Q9BX79 667 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 SLC17A9Q9BYT1 436 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 NUF2Q9BZD4 464 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 RUBCNLQ9H714 662 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PCDH12Q9NPG4 1184 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 IL1RAPL1Q9NZN1 696 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 NCKIPSDQ9NZQ3 722 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PSME2Q9UL46 239 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 MRPS33Q9Y291 106 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 DOCK2Q92608 1830 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 C9J4A7 227 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM47E-STBD1D6RA91 191 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM72CH0Y354 149 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 LATS1O95835 1130 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CRABP2P29373 138 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 OGDHQ02218 1023 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 SPIDRQ14159 915 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM72AQ5TYM5 149 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CACHD1Q5VU97 1274 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM72DQ6L9T8 149 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM72BQ86X60 149 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 KIRREL3Q8IZU9 778 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FGF14Q92915 247 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 ARL8AQ96BM9 186 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 RNF31Q96EP0 1072 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 C1QTNF1Q9BXJ1 281 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PPCSQ9HAB8 311 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PARVBQ9HBI1 364 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 HPS4Q9NQG7 708 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 SMG5Q9UPR3 1016 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FSCN2O14926 492 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 GRID2O43424 1007 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 PRAMEF11O60813 436 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 F11P03951 625 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 KLK3P07288 261 aaPredicted RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 ITPKAP23677 461 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 NAE1Q13564 534 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM45BPQ6NSW5 357 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 ALKAL1Q6UXT8 129 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 SLC41A1Q8IVJ1 513 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 DSELQ8IZU8 1212 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CHST14Q8NCH0 376 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 OR13C4Q8NGS5 318 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM45AQ8TCE6 357 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 MFSD3Q96ES6 412 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 LRIG1Q96JA1 1093 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CPNE1Q99829 537 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 ELAC2Q9BQ52 826 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 FAM83CQ9BQN1 747 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 EIF3LQ9Y262 564 aaKnown RBP9.05□□□□□ -0.96
HDAC9-229ENST00000622668 EFR3BQ9Y2G0 817 aa9.05□□□□□ -0.96
HDAC9-229ENST00000622668 CEP250Q9BV73 2442 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 EIF3HO15372 352 aaKnown RBP eCLIP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 BANF1O75531 89 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ESRRAP11474 423 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 TFEBP19484 476 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 NSG1P42857 185 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 CSNK1EP49674 416 aaKnown RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 CLCN5P51795 746 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 CHI3L2Q15782 390 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 HNRNPA1L2Q32P51 320 aaKnown RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 KBTBD12Q3ZCT8 623 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 XKR6Q5GH73 641 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 GRTP1Q5TC63 336 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 HTR3DQ70Z44 454 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ADAMTSL2Q86TH1 951 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 SELENOMQ8WWX9 145 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 JPH3Q8WXH2 748 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 NKD2Q969F2 451 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ZSWIM3Q96MP5 696 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ZSCAN5AQ9BUG6 496 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 KLF16Q9BXK1 252 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 SEMA4AQ9H3S1 761 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 HSFX1Q9UBD0 423 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 DCDC2Q9UHG0 476 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 DTNAQ9Y4J8 743 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 SNX8Q9Y5X2 465 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ARL5AQ9Y689 179 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ERAL1O75616 437 aaKnown RBP9.04□□□□□ -0.96
HDAC9-229ENST00000622668 WDR47O94967 919 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 BMP10O95393 424 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 AP2A1O95782 977 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 PYGBP11216 843 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 GCKP35557 465 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 ARFIP2P53365 341 aa9.04□□□□□ -0.96
HDAC9-229ENST00000622668 CNTN1Q12860 1018 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms