RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SCG3Q8WXD2 468 aaKnown RBP16.76■□□□□ 0.27
TRIM28-215ENST00000601150 RTP4Q96DX8 246 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 APOLD1Q96LR9 279 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 NCKIPSDQ9NZQ3 722 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 WASF3Q9UPY6 502 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ZNF148Q9UQR1 794 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ZKSCAN5Q9Y2L8 839 aa16.76■□□□□ 0.27
TRIM28-215ENST00000601150 ZNF106Q9H2Y7 1883 aaKnown RBP16.76■□□□□ 0.27
TRIM28-215ENST00000601150 FADS2P1A8MWK0 482 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 HYAL3O43820 417 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 RFPL3O75679 317 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 TOP3BO95985 862 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 FGGP02679 453 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CELA2BP08218 269 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CDK4P11802 303 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CKMT1AP12532 417 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 BPIP17213 487 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 MSNP26038 577 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CXCR5P32302 372 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 HMGCLP35914 325 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 DUSP3P51452 185 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 ILKQ13418 452 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 SNX1Q13596 522 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 SIX1Q15475 284 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 TCEA2Q15560 299 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CCNG2Q16589 344 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 ZNF569Q5MCW4 686 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 ALS2CLQ60I27 953 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 DOK6Q6PKX4 331 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 BLOC1S5Q8TDH9 187 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 GLMNQ92990 594 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 COX14Q96I36 57 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 APOL2Q9BQE5 337 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 ZSCAN5AQ9BUG6 496 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 SPATA16Q9BXB7 569 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 CARS2Q9HA77 564 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 TRMT1Q9NXH9 659 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 SLC17A4Q9Y2C5 497 aa16.75■□□□□ 0.27
TRIM28-215ENST00000601150 GOLGA4Q13439 2230 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 ZFC3H1O60293 1989 aaKnown RBP16.75■□□□□ 0.27
TRIM28-215ENST00000601150 PSMD3O43242 534 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 KIF5CO60282 957 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 METTL18O95568 372 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 IVLP07476 585 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 POLD2P49005 469 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 RPIAP49247 311 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 LONRF2Q1L5Z9 754 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 C6orf132Q5T0Z8 1188 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 ZDHHC20Q5W0Z9 365 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 PDPK2PQ6A1A2 396 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 GLT6D1Q7Z4J2 308 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 TRIM74Q86UV6 250 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 SLC35F6Q8N357 371 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 TRAM1L1Q8N609 369 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 SCARF2Q96GP6 870 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-215ENST00000601150 PLEKHG4BQ96PX9 1271 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 TBL1YQ9BQ87 522 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 SCNM1Q9BWG6 230 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 BOCQ9BWV1 1114 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 TMEM168Q9H0V1 697 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 BPIFA1Q9NP55 256 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 CNOT6Q9ULM6 557 aaKnown RBP16.74■□□□□ 0.27
TRIM28-215ENST00000601150 SUFUQ9UMX1 484 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 TMEM98Q9Y2Y6 226 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 MYLKQ15746 1914 aa16.74■□□□□ 0.27
TRIM28-215ENST00000601150 ASMTLO95671 621 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 FUCA1P04066 466 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 MYF5P13349 255 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 SPINK2P20155 84 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 ACTN2P35609 894 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 GNPDA1P46926 289 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 OLIG2Q13516 323 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 NR0B2Q15466 257 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 KCTD11Q693B1 232 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 DRICH1Q6PGQ1 229 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-215ENST00000601150 DHRS13Q6UX07 377 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 TAF8Q7Z7C8 310 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 PBKQ96KB5 322 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 SUDS3Q9H7L9 328 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-215ENST00000601150 LRRC40Q9H9A6 602 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 ARNT2Q9HBZ2 717 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 HOMER3Q9NSC5 361 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 TRNAU1APQ9NX07 287 aaKnown RBP16.73■□□□□ 0.27
TRIM28-215ENST00000601150 IL17CQ9P0M4 197 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 VPS18Q9P253 973 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 FEZ2Q9UHY8 353 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-215ENST00000601150 GPR34Q9UPC5 381 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 PKP3Q9Y446 797 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 NEUROG3Q9Y4Z2 214 aa16.73■□□□□ 0.27
TRIM28-215ENST00000601150 LY6G6EA0A0G2JKS1 128 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 USP12O75317 370 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 PPFIA2O75334 1257 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 IFNB1P01574 187 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 ATP1A1P05023 1023 aaKnown RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 ILF3Q12906 894 aaKnown RBP eCLIP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 SPARCL1Q14515 664 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 TAF1AQ15573 450 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 DENND5AQ6IQ26 1287 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 SLC35F3Q8IY50 421 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 GALNT15Q8N3T1 639 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms