RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 LCHNA4D1U4 455 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 CAPN8A6NHC0 703 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 LRRC14BA6NHZ5 514 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 C2orf81A6NN90 581 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 TRIM24O15164 1050 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 MAP3K13O43283 966 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 NRP2O60462 931 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 MT-CO1P00395 513 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 CAPNS1P04632 268 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 HMGA1P17096 107 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 RPL17P18621 184 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 TCN1P20061 433 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 FOLH1Q04609 750 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 ZNF177Q13360 481 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 C8orf82Q6P1X6 216 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 HACD2Q6Y1H2 254 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 TICAM1Q8IUC6 712 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 TOP1MTQ969P6 601 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 DCUN1D1Q96GG9 259 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 MID1IP1Q9NPA3 183 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 PLSCR2Q9NRY7 297 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 GKN1Q9NS71 199 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 FAM50BQ9Y247 325 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 A0A1B0GVM2 712 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 CBX4O00257 560 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 PITPNM1O00562 1244 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 MRASO14807 208 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 AZIN1O14977 448 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 CLASP2O75122 1294 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 NDUFS3O75489 264 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 SRP72O76094 671 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 GFAPP14136 432 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 GPX3P22352 226 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 ATXN3P54252 364 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 FOXA1P55317 472 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 ATP6V0D1P61421 351 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 GRM2Q14416 872 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 USP41Q3LFD5 358 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 RARS2Q5T160 578 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 ADGRF1Q5T601 910 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 FOXB2Q5VYV0 432 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 KANK2Q63ZY3 851 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 SPATA24Q86W54 205 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 FUNDC1Q8IVP5 155 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 LRRC43Q8N309 656 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 SNX31Q8N9S9 440 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 ADCY4Q8NFM4 1077 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 OR9I1Q8NGQ6 314 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 TWIST2Q8WVJ9 160 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 BIRC8Q96P09 236 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 NSUN5Q96P11 429 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 GCNAQ96QF7 691 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 SMIM14Q96QK8 99 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 CCDC68Q9H2F9 335 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 COPS7BQ9H9Q2 264 aaPredicted RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 SPAG4Q9NPE6 437 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 EPS15L1Q9UBC2 864 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 IKZF3Q9UKT9 509 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 PCDHGC4Q9Y5F7 938 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 RAI2Q9Y5P3 530 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 BACE2Q9Y5Z0 518 aa10.04□□□□□ -0.8
VPS53-220ENST00000576149 OAS3Q9Y6K5 1087 aaKnown RBP10.04□□□□□ -0.8
VPS53-220ENST00000576149 ANKRD66B4E2M5 251 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 DENRO43583 198 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 SEC24AO95486 1093 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 LPOP22079 712 aaPredicted RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 STX1BP61266 288 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 CLCQ05315 142 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 RAD51Q06609 339 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TRAP1Q12931 704 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 FBXL19Q6PCT2 694 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PHYKPLQ8IUZ5 450 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 CATSPER1Q8NEC5 780 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 LPCAT1Q8NF37 534 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TRPC4APQ8TEL6 797 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 FAM210AQ96ND0 272 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TRAPPC9Q96Q05 1148 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PKP2Q99959 881 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 ZBED2Q9BTP6 218 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PCDHAC1Q9H158 963 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 RSPH9Q9H1X1 276 aaPredicted RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 TRPM5Q9NZQ8 1165 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 HACD3Q9P035 362 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TMEM181Q9P2C4 612 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 CD300AQ9UGN4 299 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 AFF4Q9UHB7 1163 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 CROTQ9UKG9 612 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 RNF112Q9ULX5 631 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 VPS9D1Q9Y2B5 631 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PRORSD1PA6NEY8 169 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 SUPT3HB4E1H0 165 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 PIP5K1BO14986 540 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 TSPAN3O60637 253 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 SUPT3HO75486 399 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 ECI2O75521 394 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 C8BP07358 591 aa10.03□□□□□ -0.8
VPS53-220ENST00000576149 EEF1DP29692 281 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 ALDH7A1P49419 539 aaKnown RBP10.03□□□□□ -0.8
VPS53-220ENST00000576149 CDKN1CP49918 316 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms