RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 AMFRQ9UKV5 643 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 SUFUQ9UMX1 484 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 GUCA1BQ9UMX6 200 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 SHOC2Q9UQ13 582 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 PPP2R2CQ9Y2T4 447 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 PLEKHM1Q9Y4G2 1056 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 GPSM3Q9Y4H4 160 aa13.58□□□□□ -0.24
VPS9D1-204ENST00000565023 hCG_1818297A0A087WSY0 165 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 TNFRSF10CO14798 259 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 PMPCBO75439 489 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 MT-CYBP00156 380 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 FUCA1P04066 466 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 HOXC4P09017 264 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 MAZP56270 477 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 COPS2P61201 443 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 CCL7P80098 99 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 RTP5Q14D33 572 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 PPP2R5EQ16537 467 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 ALS2CLQ60I27 953 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 SLC30A9Q6PML9 568 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 LVRNQ6Q4G3 990 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 RBM44Q6ZP01 1051 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 LYSMD3Q7Z3D4 306 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 TFB1MQ8WVM0 346 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 ALG3Q92685 438 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 P3H4Q92791 437 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 ATXN7L3BQ96GX2 97 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 NAF1Q96HR8 494 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 FRMD8Q9BZ67 464 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 KCNF1Q9H3M0 494 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 GLOD4Q9HC38 313 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 KLHL8Q9P2G9 620 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 DKK4Q9UBT3 224 aa13.57□□□□□ -0.24
VPS9D1-204ENST00000565023 MIF4GDA9UHW6 222 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ANKRD66B4E2M5 251 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 FTCDO95954 541 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 SOD1P00441 154 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ATP1A1P05023 1023 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 RPLP0P05388 317 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 PTPN3P26045 913 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 PTPN7P35236 360 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 NR2C2P49116 596 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 RWDD2BP57060 319 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ILF3Q12906 894 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 BIRC2Q13490 618 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ISXQ2M1V0 245 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 TEX44Q53QW1 395 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 CCHCR1Q8TD31 782 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 PATE1Q8WXA2 126 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 IMP4Q96G21 291 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 CRELD1Q96HD1 420 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 HES6Q96HZ4 224 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 GFM1Q96RP9 751 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ADGRE3Q9BY15 652 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 GSDMCQ9BYG8 508 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 SLC25A51Q9H1U9 297 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 C10orf88Q9H8K7 445 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 EPB41L5Q9HCM4 733 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 ARFGAP3Q9NP61 516 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 LZTFL1Q9NQ48 299 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 SPATS2LQ9NUQ6 558 aaKnown RBP13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 WDR70Q9NW82 654 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 PKD2L2Q9NZM6 624 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 DNPEPQ9ULA0 475 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 SATB2Q9UPW6 733 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 EFR3BQ9Y2G0 817 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 PRKAB1Q9Y478 270 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 NAV2Q8IVL1 2488 aa13.56□□□□□ -0.24
VPS9D1-204ENST00000565023 TRBV23OR9-2A0A075B6M9 112 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 PMS2P1A4D2B8 440 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 H7C0C1 242 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 DDX3YO15523 660 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 NOBOXO60393 691 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 PTMAP06454 111 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 PYGMP11217 842 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 NFKB1P19838 968 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ITPKBP27987 946 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ACTR1BP42025 376 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ATP5OP48047 213 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 SPINT3P49223 89 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ACTR1AP61163 376 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 RPL26P61254 145 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 CTBSQ01459 385 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 CDK18Q07002 472 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 DPTQ07507 201 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 CCDC173Q0VFZ6 552 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 PRKD1Q15139 912 aaPredicted RBP13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 NOMO1Q15155 1222 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 C14orf28Q4W4Y0 310 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 CCDC70Q6NSX1 233 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ADAMTSL4Q6UY14 1074 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 BZW1Q7L1Q6 419 aaKnown RBP13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 PID1Q7Z2X4 250 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 NRROSQ86YC3 692 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 CACTIN-AS1Q8N1I8 211 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 SLC25A41Q8N5S1 370 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 UBL4BQ8N7F7 174 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 GPR156Q8NFN8 814 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 ZDHHC1Q8WTX9 485 aa13.55□□□□□ -0.24
VPS9D1-204ENST00000565023 HIC2Q96JB3 615 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms