RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	P4HA1	P13674	534 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	PRLR	P16471	622 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	ITIH1	P19827	911 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	ETV5	P41161	510 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	RECQL	P46063	649 aa	Predicted RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SLC11A2	P49281	568 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SGSH	P51688	502 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CASP5	P51878	434 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	PLK1	P53350	603 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	AP3M2	P53677	418 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CLDN2	P57739	230 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	ANAPC15	P60006	121 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	YWHAG	P61981	247 aa	Known RBP eCLIP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SNRPF	P62306	86 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CYP24A1	Q07973	514 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SLC12A1	Q13621	1099 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	DRAP1	Q14919	205 aa	Predicted RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SNRNP35	Q16560	246 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SGSM1	Q2NKQ1	1148 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	DEFB133	Q30KQ1	61 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZNF667	Q5HYK9	610 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	RAB41	Q5JT25	222 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	RNF219	Q5W0B1	726 aa	Predicted RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	RFWD3	Q6PCD5	774 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	GCNT7	Q6ZNI0	430 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	POLN	Q7Z5Q5	900 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	PARG	Q86W56	976 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	MFN1	Q8IWA4	741 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CCDC117	Q8IWD4	279 aa	Predicted RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LMX1A	Q8TE12	382 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	NOC3L	Q8WTT2	800 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LARP4B	Q92615	738 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CCDC127	Q96BQ5	260 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SGSM3	Q96HU1	749 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	FEM1C	Q96JP0	617 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	RPL10L	Q96L21	214 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LENG8	Q96PV6	779 aa	Predicted RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	TAAR9	Q96RI9	348 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	HAPLN3	Q96S86	360 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	DDX50	Q9BQ39	737 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SLC17A9	Q9BYT1	436 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	SDCBP2	Q9H190	292 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LRRN3	Q9H3W5	708 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	TBC1D7	Q9P0N9	293 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	IPO11	Q9UI26	975 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	APPL1	Q9UKG1	709 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LOXL2	Q9Y4K0	774 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	PCDHGA3	Q9Y5H0	932 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	LRRK1	Q38SD2	2015 aa		4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	ANKHD1	Q8IWZ3	2542 aa	Known RBP	4.8	□□□□□ -1.64
SCFD1-223	ENST00000557076	CSMD2	Q7Z408	3487 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZFC3H1	O60293	1989 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	GOLGA6L7	A0A1B0GV03	622 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	FRMD3	A2A2Y4	597 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	EFCAB7	A8K855	629 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	NKX2-8	O15522	239 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	HNRNPR	O43390	633 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ACSL4	O60488	711 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	CNTN5	O94779	1100 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZNF202	O95125	648 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	IL18BP	O95998	194 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZBED1	O96006	694 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	PAK4	O96013	591 aa	Predicted RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	LDLR	P01130	860 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	C4BPA	P04003	597 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ANXA6	P08133	673 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZNF888	P0CJ79	500 aa	Predicted RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	LIF	P15018	202 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ADORA2B	P29275	332 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	UGT1A3	P35503	534 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	LONP1	P36776	959 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ADK	P55263	362 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	HMGN5	P82970	282 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	MC1R	Q01726	317 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	EIF2B5	Q13144	721 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	PTK2B	Q14289	1009 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	FGL2	Q14314	439 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZNF699	Q32M78	642 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	FAM133B	Q5BKY9	247 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	FSCB	Q5H9T9	825 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	PITRM1	Q5JRX3	1037 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	PIP5KL1	Q5T9C9	394 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	BSPRY	Q5W0U4	402 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	NUGGC	Q68CJ6	796 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	KYAT3	Q6YP21	454 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ASB18	Q6ZVZ8	466 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	STXBP4	Q6ZWJ1	553 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ZSCAN30	Q86W11	494 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	RBM12B	Q8IXT5	1001 aa	Known RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	AMER2	Q8N7J2	671 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	ARL10	Q8N8L6	244 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	HJURP	Q8NCD3	748 aa	Predicted RBP	4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	TMIE	Q8NEW7	156 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	CPT1C	Q8TCG5	803 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	RNF139	Q8WU17	664 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	OR8D1	Q8WZ84	308 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	TAF4B	Q92750	862 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	KLK6	Q92876	244 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	PPP1R9B	Q96SB3	815 aa		4.79	□□□□□ -1.64
SCFD1-223	ENST00000557076	TACO1	Q9BSH4	297 aa	Known RBP	4.79	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms