RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 AMPHP49418 695 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 PITX1P78337 314 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-216ENST00000555550 FCN2Q15485 313 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 CCDC6Q16204 474 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 C6orf141Q5SZD1 244 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 TTI2Q6NXR4 508 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 PQLC2Q6ZP29 291 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 KCTD8Q6ZWB6 473 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 C1orf87Q8N0U7 546 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 CIARTQ8N365 385 aaPredicted RBP3.7□□□□□ -1.82
SCFD1-216ENST00000555550 PCDH20Q8N6Y1 951 aaKnown RBP3.7□□□□□ -1.82
SCFD1-216ENST00000555550 MYRIPQ8NFW9 859 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 GTF3C6Q969F1 213 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 QRFPRQ96P65 431 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 DUX3Q96PT4 197 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 EIF2AK1Q9BQI3 630 aaKnown RBP3.7□□□□□ -1.82
SCFD1-216ENST00000555550 SYT17Q9BSW7 474 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 KIF9Q9HAQ2 790 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 KLHL1Q9NR64 748 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 TMEM30AQ9NV96 361 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 OR2W1Q9Y3N9 320 aa3.7□□□□□ -1.82
SCFD1-216ENST00000555550 COL2A1P02458 1487 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 EIF3CLB5ME19 914 aaKnown RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 WDR1O75083 606 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 FTCDO95954 541 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 AMBPP02760 352 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 ZNF883P0CG24 379 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 ABCD3P28288 659 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 EEF1A1P68104 462 aaKnown RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 GTF2H2Q13888 395 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 FGFBP1Q14512 234 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 USP41Q3LFD5 358 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 TMEM35AQ53FP2 167 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 STXBP5Q5T5C0 1151 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 SLC9C2Q5TAH2 1124 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 EEF1A1P5Q5VTE0 462 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 GTF2H2CQ6P1K8 395 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 NFE4Q86UQ8 179 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 KRTAP7-1Q8IUC3 87 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 SMAP1Q8IYB5 467 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 WDSUB1Q8N9V3 476 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 SLC24A4Q8NFF2 622 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 ST8SIA4Q92187 359 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 PIGTQ969N2 578 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 PCGF1Q9BSM1 259 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 LRRC1Q9BTT6 524 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 POLR3CQ9BUI4 534 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 PRKRIP1Q9H875 184 aaPredicted RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 FKRPQ9H9S5 495 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 SLC28A3Q9HAS3 691 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 HAO1Q9UJM8 370 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 TCF19Q9Y242 345 aa3.69□□□□□ -1.82
SCFD1-216ENST00000555550 LRRFIP2Q9Y608 721 aaKnown RBP3.69□□□□□ -1.82
SCFD1-216ENST00000555550 LILRA5A6NI73 299 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 TAF4O00268 1085 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 SPINT2O43291 252 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 IL7RP16871 459 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 POLR2CP19387 275 aaPredicted RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 EIF3BP55884 814 aaKnown RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 PTP4A2Q12974 167 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 DCTN2Q13561 401 aaKnown RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 PLA2G4FQ68DD2 849 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 ZNF852Q6ZMS4 543 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 GPR180Q86V85 440 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 EPHX4Q8IUS5 362 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 ESX1Q8N693 406 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 NFKBIDQ8NI38 313 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 HMGCLL1Q8TB92 370 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 GRAPLQ8TC17 118 aaPredicted RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 ANKRD9Q96BM1 317 aaPredicted RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 GRAMD2BQ96HH9 432 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 HARBI1Q96MB7 349 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 PCYT2Q99447 389 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 UPF2Q9HAU5 1272 aaKnown RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 ASAH2Q9NR71 780 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 ACSS1Q9NUB1 689 aaPredicted RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 MAP3K20Q9NYL2 800 aaKnown RBP3.68□□□□□ -1.82
SCFD1-216ENST00000555550 SLC13A4Q9UKG4 626 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 KLHL20Q9Y2M5 609 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 CYP46A1Q9Y6A2 500 aa3.68□□□□□ -1.82
SCFD1-216ENST00000555550 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 HS3ST1O14792 307 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 F9P00740 461 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 CDKN1AP38936 164 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 HARS2P49590 506 aaKnown RBP3.67□□□□□ -1.82
SCFD1-216ENST00000555550 HOXA1P49639 335 aaPredicted RBP3.67□□□□□ -1.82
SCFD1-216ENST00000555550 RARSP54136 660 aaKnown RBP3.67□□□□□ -1.82
SCFD1-216ENST00000555550 TAS2R38P59533 333 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 SREBF2Q12772 1141 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 ZNF234Q14588 700 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 ALG11Q2TAA5 492 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 SIRPB2Q5JXA9 342 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 DCST1Q5T197 706 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 FRG2Q64ET8 278 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 OR7E24Q6IFN5 339 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 ZNF280DQ6N043 979 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 TSSK4Q6SA08 328 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 ASB18Q6ZVZ8 466 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 CACNA2D4Q7Z3S7 1137 aa3.67□□□□□ -1.82
SCFD1-216ENST00000555550 HEATR4Q86WZ0 1026 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms