RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 GSDMAQ96QA5 445 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 NUDT9Q9BW91 350 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 TBC1D10AQ9BXI6 508 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 SCAND2PQ9GZW5 306 aaPredicted RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PDCL3Q9H2J4 239 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PRSS44E7EML9 344 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 C9P02748 559 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 TEAD1P28347 426 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 EPHB2P29323 1055 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 ETV3P41162 512 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 PTGIRP43119 386 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 MARSP56192 900 aaKnown RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 PER3P56645 1201 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 IL10RAQ13651 578 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 CNGA3Q16281 694 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 C2CD6Q53TS8 623 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 FAM199XQ6PEV8 388 aaPredicted RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 TRIM65Q6PJ69 517 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 MARK2Q7KZI7 788 aaKnown RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 ARCQ7LC44 396 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 PPP1R3BQ86XI6 285 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 EMC1Q8N766 993 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 TSEN2Q8NCE0 465 aaKnown RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 DTD2Q96FN9 168 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 DHTKD1Q96HY7 919 aaPredicted RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 LURAP1Q96LR2 239 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 CRACR2AQ9BSW2 395 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 GOLPH3LQ9H4A5 285 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 AKIRIN1Q9H9L7 192 aaPredicted RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 PDFQ9HBH1 243 aa13.69□□□□□ -0.22
PRPF39-204ENST00000553605 CNOT8Q9UFF9 292 aaKnown RBP13.69□□□□□ -0.22
PRPF39-204ENST00000553605 MED13LQ71F56 2210 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 SSU72P8A0A1W2PR75 194 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 A6NL46 340 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 J3KR12 359 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 TRAFD1O14545 582 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 ZNF185O15231 689 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 TOX3O15405 576 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 LRRTM2O43300 516 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 SLC9A1P19634 815 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 LPOP22079 712 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 CDH5P33151 784 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 CLCN1P35523 988 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 APBA1Q02410 837 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 STIM1Q13586 685 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 C15orf59Q2T9L4 293 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 HSD11B1LQ7Z5J1 315 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 GALNT13Q8IUC8 556 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 CBARPQ8N350 705 aaPredicted RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 LZTR1Q8N653 840 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 CCDC185Q8N715 623 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 TGM7Q96PF1 710 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 APEX2Q9UBZ4 518 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 TBC1D29Q9UFV1 150 aa13.68□□□□□ -0.22
PRPF39-204ENST00000553605 FARSAQ9Y285 508 aaKnown RBP13.68□□□□□ -0.22
PRPF39-204ENST00000553605 HEXIM1O94992 359 aaKnown RBP13.67□□□□□ -0.22
PRPF39-204ENST00000553605 TIAF1O95411 115 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 GNA14O95837 355 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 ITGA3P26006 1051 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 GPR1P46091 355 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 PKP1Q13835 747 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 CCDC14Q49A88 953 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 TTI2Q6NXR4 508 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 Q6ZVL8 140 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 UMODL1-AS1Q8N2C9 162 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 FNIP1Q8TF40 1166 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 SMAD5Q99717 465 aaKnown RBP13.67□□□□□ -0.22
PRPF39-204ENST00000553605 METTL5Q9NRN9 209 aaKnown RBP13.67□□□□□ -0.22
PRPF39-204ENST00000553605 GPR83Q9NYM4 423 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 OGFRQ9NZT2 677 aa13.67□□□□□ -0.22
PRPF39-204ENST00000553605 COPG1Q9Y678 874 aaKnown RBP13.67□□□□□ -0.22
PRPF39-204ENST00000553605 LILRA5A6NI73 299 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 WASH4PA8MWX3 477 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 FOXN3O00409 490 aaPredicted RBP13.66□□□□□ -0.22
PRPF39-204ENST00000553605 PRAMEF11O60813 436 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 ZG16O60844 167 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 PALMO75781 387 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 RASSF9O75901 435 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 TMEM63AO94886 807 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 SMC2O95347 1197 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 SLC2A4P14672 509 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 TYRP1P17643 537 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 SDC4P31431 198 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 VIPR1P32241 457 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 DPTQ07507 201 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 NSUN2Q08J23 767 aaKnown RBP eCLIP13.66□□□□□ -0.22
PRPF39-204ENST00000553605 LAMB3Q13751 1172 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 ERICH6BQ5W0A0 696 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 CYB5D1Q6P9G0 228 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 CHST15Q7LFX5 561 aaPredicted RBP13.66□□□□□ -0.22
PRPF39-204ENST00000553605 GDF7Q7Z4P5 450 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 TRIM74Q86UV6 250 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 PYROXD2Q8N2H3 581 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 RXFP2Q8WXD0 754 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 HERPUD2Q9BSE4 406 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 PDE7BQ9NP56 450 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 CPNE7Q9UBL6 633 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 ZNHIT2Q9UHR6 403 aa13.66□□□□□ -0.22
PRPF39-204ENST00000553605 B3GNT3Q9Y2A9 372 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms