RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 RPS18P62269 152 aaKnown RBP12.82□□□□□ -0.36
VPS29-211ENST00000553128 POLR2LP62875 67 aaKnown RBP12.82□□□□□ -0.36
VPS29-211ENST00000553128 PEX6Q13608 980 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 DNASE1L3Q13609 305 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 JMJD6Q6NYC1 403 aaPredicted RBP12.82□□□□□ -0.36
VPS29-211ENST00000553128 SLC30A5Q8TAD4 765 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 STAMBPL1Q96FJ0 436 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 OR6C1Q96RD1 312 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 AGAP2Q99490 1192 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 SLC25A23Q9BV35 468 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 ACTL8Q9H568 366 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 OGFRQ9NZT2 677 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 MAP10Q9P2G4 905 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 TBC1D29Q9UFV1 150 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 PCDHGC4Q9Y5F7 938 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 PCDHGA6Q9Y5G7 932 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 FHOD1Q9Y613 1164 aa12.82□□□□□ -0.36
VPS29-211ENST00000553128 PDZD2O15018 2839 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 A6NCN8 305 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 NPIPB15A6NHN6 443 aaPredicted RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 INPP4BO15327 924 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 NDUFA10O95299 355 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 TIAF1O95411 115 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 MMP8P22894 467 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 CASP14P31944 242 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 RFC1P35251 1148 aaPredicted RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 NOP2P46087 812 aaKnown RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 SEPHS1P49903 392 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 CCL11P51671 97 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 SCYL2Q6P3W7 929 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 IYDQ6PHW0 289 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 LYSMD3Q7Z3D4 306 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 MSANTD4Q8NCY6 345 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 EPS8L1Q8TE68 723 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 TIGD1Q96MW7 591 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 SMIM14Q96QK8 99 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 C11orf70Q9BRQ4 267 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 CINPQ9BW66 212 aaPredicted RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 SARS2Q9NP81 518 aaKnown RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 LNPEPQ9UIQ6 1025 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 FZD10Q9ULW2 581 aa12.81□□□□□ -0.36
VPS29-211ENST00000553128 MN1Q10571 1320 aaPredicted RBP12.81□□□□□ -0.36
VPS29-211ENST00000553128 ARGFXA6NJG6 315 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 CCP110O43303 1012 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 ANKRD34CP0C6C1 535 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 TEAD1P28347 426 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 GPR1P46091 355 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 NDST2P52849 883 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 PTP4A2Q12974 167 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 IL10RAQ13651 578 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 NR6A1Q15406 480 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 PAPD7Q5XG87 772 aaKnown RBP12.8□□□□□ -0.36
VPS29-211ENST00000553128 FAM199XQ6PEV8 388 aaPredicted RBP12.8□□□□□ -0.36
VPS29-211ENST00000553128 WDR59Q6PJI9 974 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 TECPR1Q7Z6L1 1165 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 GALNT13Q8IUC8 556 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 RASGRP3Q8IV61 690 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 ARHGAP12Q8IWW6 846 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 TP53INP2Q8IXH6 220 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 SCAMP4Q969E2 229 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 C9orf72Q96LT7 481 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 ABCG8Q9H221 673 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 CATSPERBQ9H7T0 1116 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 LHX9Q9NQ69 397 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 GPATCH2LQ9NWQ4 482 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 KCNK6Q9Y257 313 aa12.8□□□□□ -0.36
VPS29-211ENST00000553128 PCDHGA9Q9Y5G4 932 aaKnown RBP12.8□□□□□ -0.36
VPS29-211ENST00000553128 HTRA2O43464 458 aaPredicted RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 KIF1CO43896 1103 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 DNAJC6O75061 913 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 SPAG6O75602 509 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 CPP00450 1065 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 C9P02748 559 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 CYP1A1P04798 512 aaPredicted RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 TYRP1P17643 537 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 CHRNB2P17787 502 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 GPD1P21695 349 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 GARSP41250 739 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 LEPRP48357 1165 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 EPHA4P54764 986 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 DPTQ07507 201 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 NSUN2Q08J23 767 aaKnown RBP eCLIP12.79□□□□□ -0.36
VPS29-211ENST00000553128 LAMB3Q13751 1172 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 SLC6A19Q695T7 634 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 SMYD5Q6GMV2 418 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 ADAMTSL4Q6UY14 1074 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 CHST15Q7LFX5 561 aaPredicted RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 RBMXL3Q8N7X1 1067 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 SPOCK2Q92563 424 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 TGM7Q96PF1 710 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 RANBP9Q96S59 729 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 NAA15Q9BXJ9 866 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 ING2Q9H160 280 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 HOOK1Q9UJC3 728 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 NOCTQ9UK39 431 aaKnown RBP12.79□□□□□ -0.36
VPS29-211ENST00000553128 PADI1Q9ULC6 663 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 SLC30A1Q9Y6M5 507 aa12.79□□□□□ -0.36
VPS29-211ENST00000553128 GOLGA6L3A6NEY3 463 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 ARHGAP42A6NI28 874 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 FGF10O15520 208 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms