RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 H0YJX3 145 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 MAN2B1O00754 1011 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 MSI1O43347 362 aaKnown RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ZMPSTE24O75844 475 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 STC2O76061 302 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TMEM63AO94886 807 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CYP17A1P05093 508 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CHRNB1P11230 501 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PABPC1P11940 636 aaKnown RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TCF4P15884 667 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 HOXC13P31276 330 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PCYT1AP49585 367 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 GAS6Q14393 721 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 DHCR24Q15392 516 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 MOGQ16653 247 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ATP13A4Q4VNC1 1196 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 FSCBQ5H9T9 825 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 LY6G5CQ5SRR4 150 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 BTBD8Q5XKL5 378 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 C16orf89Q6UX73 402 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 C12orf40Q86WS4 652 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 RALGPS2Q86X27 583 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CARM1Q86X55 608 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TMEM25Q86YD3 366 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ZDHHC17Q8IUH5 632 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SFTPA1Q8IWL2 248 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CTAGE3PQ8IX95 158 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PPM1NQ8N819 430 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SLC35B2Q8TB61 432 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 RXFP2Q8WXD0 754 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ATP2A3Q93084 1043 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 EFHD2Q96C19 240 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CCDC138Q96M89 665 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NSMCE3Q96MG7 304 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 OLFM1Q99784 485 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NDEL1Q9GZM8 345 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 C8orf33Q9H7E9 229 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 LMAN1LQ9HAT1 526 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CLK4Q9HAZ1 481 aaKnown RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 MARCH2Q9P0N8 246 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SLC8A2Q9UPR5 921 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 AP4S1Q9Y587 144 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 hCG_1818297A0A087WSY0 165 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 A0A087WXM4 84 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PRSS51A0A1B0GVH4 220 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TCRBV7S3A2A0A539 114 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SLC12A8A0AV02 714 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 C2CD4BA6NLJ0 364 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CFAP99D6REC4 459 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 GIPC1O14908 333 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 AQP9O43315 295 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 KDM1AO60341 852 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 LTFP02788 710 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 INHBBP09529 407 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NELFEP18615 380 aaKnown RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 GPD1P21695 349 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CRHR1P34998 444 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PTPN7P35236 360 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 IDH3AP50213 366 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF143P52747 638 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 MLLT6P55198 1093 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CCINQ13939 588 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 DPYSQ14117 519 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PPP2R5DQ14738 602 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NR1D2Q14995 579 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NDUFA5Q16718 116 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CCDC14Q49A88 953 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TFDP3Q5H9I0 405 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SH3PXD2AQ5TCZ1 1133 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SYPL2Q5VXT5 272 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TRNP1Q6NT89 227 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 XKR5Q6UX68 686 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 Q6ZS52 159 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 HTR3DQ70Z44 454 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 IGDCC3Q8IVU1 814 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SCML4Q8N228 414 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TAB3Q8N5C8 712 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ARFGAP1Q8N6T3 406 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 DTWD2Q8NBA8 298 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ADAM32Q8TC27 787 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 GRIN3AQ8TCU5 1115 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 FNIP1Q8TF40 1166 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SREK1Q8WXA9 508 aaKnown RBP7.66□□□□□ -1.18
LIMA1-216ENST00000552909 CLDN23Q96B33 292 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF778Q96MU6 729 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 FERMT1Q9BQL6 677 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 TMEM79Q9BSE2 394 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PARVBQ9HBI1 364 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ABCC13Q9NSE7 274 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 ASNSD1Q9NWL6 643 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 C2orf42Q9NWW7 574 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 NCKIPSDQ9NZQ3 722 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 PCSK1NQ9UHG2 260 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 HCN4Q9Y3Q4 1203 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 SDK1Q7Z5N4 2213 aa7.66□□□□□ -1.18
LIMA1-216ENST00000552909 DMXL1Q9Y485 3027 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 GPR179Q6PRD1 2367 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 FAM47E-STBD1D6RA91 191 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 TRIM24O15164 1050 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 PFDN6O15212 129 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms