RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SELPLGQ14242 412 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PAFAH1B3Q15102 231 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 GRIK4Q16099 956 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ADPRMQ3LIE5 342 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 CCNYL2Q5T2Q4 361 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 LCN8Q6JVE9 175 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PIWIL4Q7Z3Z4 852 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PHYKPLQ8IUZ5 450 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 MFSD4AQ8N468 514 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 RYBPQ8N488 228 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 SLC16A10Q8TF71 515 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 DNAJB3Q8WWF6 145 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 DPF3Q92784 378 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 EMID1Q96A84 441 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 LRRC58Q96CX6 371 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 C19orf60Q96EN9 201 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF641Q96N77 438 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF347Q96SE7 839 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 CHID1Q9BWS9 393 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 BTBD2Q9BX70 525 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 EIF2AQ9BY44 585 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 AMBRA1Q9C0C7 1298 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 RAD21L1Q9H4I0 556 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM30AQ9NV96 361 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 DDIT4Q9NX09 232 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PCDHB3Q9Y5E6 796 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PCDHA9Q9Y5H5 950 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 OAS3Q9Y6K5 1087 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 GOLGA4Q13439 2230 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 OR51F1A6NGY5 319 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PIP5K1BO14986 540 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 MSI1O43347 362 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 XPNPEP2O43895 674 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 CNTN5O94779 1100 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ESRRBO95718 433 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 APOA4P06727 396 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 SPNP16150 400 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 IL10P22301 178 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ATP5F1P24539 256 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ICAM3P32942 547 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 CDKN2DP55273 166 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 TPI1P60174 286 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 VBP1P61758 197 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 NKG7Q16617 165 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 SLC25A52Q3SY17 297 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PAGE2BQ5JRK9 111 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 FBXO47Q5MNV8 452 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 NOL9Q5SY16 702 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 IQSEC1Q6DN90 963 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 NEPROQ6NW34 567 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PACRGLQ8N7B6 248 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 DCBLD1Q8N8Z6 715 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 IPMKQ8NFU5 416 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 OR52K2Q8NGK3 314 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 HTRA1Q92743 480 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 RPL3LQ92901 407 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ZUFSPQ96AP4 578 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM125Q96AQ2 219 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 PTERQ96BW5 349 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 BIRC7Q96CA5 298 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ITPKCQ96DU7 683 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 C12orf42Q96LP6 360 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 RNF145Q96MT1 663 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 MRPL57Q9BQC6 102 aaKnown RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 C9orf16Q9BUW7 83 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 C1orf50Q9BV19 199 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 KIFC1Q9BW19 673 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ASB7Q9H672 318 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 GPN2Q9H9Y4 310 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ATAD3AQ9NVI7 634 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 WDR70Q9NW82 654 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ACTR3BQ9P1U1 418 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 MTRRQ9UBK8 725 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 STAP1Q9ULZ2 295 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ADAMTS5Q9UNA0 930 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 ANKRD6Q9Y2G4 727 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 COMMD10Q9Y6G5 202 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 TTC3P53804 2025 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 MIA3Q5JRA6 1907 aa4.84□□□□□ -1.63
LIMA1-214ENST00000552783 NUP214P35658 2090 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-214ENST00000552783 AQP12BA6NM10 295 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 CLDN25C9JDP6 229 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 CDK14O94921 469 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 PRSS23O95084 383 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 HSPA8P11142 646 aaKnown RBP4.84□□□□□ -1.64
LIMA1-214ENST00000552783 CPB1P15086 417 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 PRDX3P30048 256 aaKnown RBP4.84□□□□□ -1.64
LIMA1-214ENST00000552783 ATICP31939 592 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 MAP2K4P45985 399 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 ARPP19P56211 112 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 LIPEQ05469 1076 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 DMPKQ09013 629 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 IHHQ14623 411 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 PCSK7Q16549 785 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 UNC50Q53HI1 259 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 TMTC4Q5T4D3 741 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 GPR158Q5T848 1215 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 LAIR1Q6GTX8 287 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 GPRIN1Q7Z2K8 1008 aa4.84□□□□□ -1.64
LIMA1-214ENST00000552783 SAPCD2Q86UD0 394 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms