RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	ZNF821	O75541	412 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	FLOT1	O75955	427 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	THRB	P10828	461 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	AREG	P15514	252 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ITIH1	P19827	911 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ACHE	P22303	614 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	FDXR	P22570	491 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PTPN4	P29074	926 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	GZMK	P49863	264 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PTTG1IP	P53801	180 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	NPEPPS	P55786	919 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	CARD18	P57730	90 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RBM6	P78332	1123 aa	Known RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ATP2C1	P98194	919 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	GCNT1	Q02742	428 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TAP1	Q03518	808 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TAP2	Q03519	686 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TCF15	Q12870	199 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	OVGP1	Q12889	678 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	FHL3	Q13643	280 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ZMYND11	Q15326	602 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	CLPP	Q16740	277 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PFKFB3	Q16875	520 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	FAM187B	Q17R55	369 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	P3H1	Q32P28	736 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	MCMDC2	Q4G0Z9	681 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	DAB2IP	Q5VWQ8	1189 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TOM1L2	Q6ZVM7	507 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	MTSS1L	Q765P7	747 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	AACS	Q86V21	672 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	SGMS1	Q86VZ5	419 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	LRRC49	Q8IUZ0	686 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	DENND6A	Q8IWF6	608 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PHC2	Q8IXK0	858 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ABRA	Q8N0Z2	381 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF321P	Q8N8H1	164 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	EIF1AD	Q8N9N8	165 aa	Known RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	EXOC6	Q8TAG9	804 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	SGCD	Q92629	289 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	C19orf60	Q96EN9	201 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	MMAB	Q96EY8	250 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	C11orf24	Q96F05	449 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TMEM176A	Q96HP8	235 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF668	Q96K58	619 aa	Predicted RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RMDN2	Q96LZ7	410 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	EGFL8	Q99944	293 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	C17orf80	Q9BSJ5	609 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RTN4R	Q9BZR6	473 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TRIM2	Q9C040	744 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RAB33B	Q9H082	229 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	SLC6A15	Q9H2J7	730 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	RMND5A	Q9H871	391 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	HAO2	Q9NYQ3	351 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	ERAP1	Q9NZ08	941 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	HSPB7	Q9UBY9	170 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PCDHB7	Q9Y5E2	793 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	PDS5B	Q9NTI5	1447 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440	DHX29	Q7Z478	1369 aa	Known RBP	4.22	□□□□□ -1.73
USP44-208	ENST00000552440	TNIK	Q9UKE5	1360 aa		4.22	□□□□□ -1.73
USP44-208	ENST00000552440		A0A087X1B8	175 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	GXYLT2	A0PJZ3	443 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM90A8P	A6NJQ4	464 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ACOD1	A6NK06	481 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440		F8WDY8	70 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CLDN3	O15551	220 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PJA2	O43164	708 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	RGS10	O43665	173 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CBFA2T3	O75081	653 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	USP12	O75317	370 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	IPO13	O94829	963 aa	Known RBP	4.21	□□□□□ -1.74
USP44-208	ENST00000552440	SEC31A	O94979	1220 aa	Known RBP	4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CELF2	O95319	508 aa	Known RBP	4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PCCB	P05166	539 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM90A13P	P0C7W8	464 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM90A24P	P0C7X0	464 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PCNA	P12004	261 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CTPS1	P17812	591 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CHRM3	P20309	590 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CYP2A7	P20853	494 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	GPT	P24298	496 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	PON1	P27169	355 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	WNT5A	P41221	380 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ARHGAP25	P42331	645 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CRKL	P46109	303 aa	Known RBP	4.21	□□□□□ -1.74
USP44-208	ENST00000552440	AP3M2	P53677	418 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	NAGLU	P54802	743 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	UCP2	P55851	309 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CTAG1A	P78358	180 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	CCDC173	Q0VFZ6	552 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	RUNX2	Q13950	521 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ARHGEF6	Q15052	776 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ERCC6L	Q2NKX8	1250 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	ZSCAN23	Q3MJ62	389 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	RUNDC3A	Q59EK9	446 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	NOMO2	Q5JPE7	1267 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	C6orf136	Q5SQH8	315 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM160B1	Q5W0V3	765 aa		4.21	□□□□□ -1.74
USP44-208	ENST00000552440	FAM91A1	Q658Y4	838 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms