RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ZNF140P52738 457 aaPredicted RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 RPS14P62263 151 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 FAM193AP78312 1265 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 CNGA3Q16281 694 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 PLK5Q496M5 336 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 HSP90B2PQ58FF3 399 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 AARS2Q5JTZ9 985 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 MRNIPQ6NTE8 343 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 AFTPHQ6ULP2 937 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 CAPN12Q6ZSI9 719 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 KIAA0408Q6ZU52 694 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 USP30Q70CQ3 517 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 DPPA4Q7L190 304 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 PARS2Q7L3T8 475 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 SYT13Q7L8C5 426 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 LYSMD3Q7Z3D4 306 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 SDCCAG8Q86SQ7 713 aaPredicted RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 KCNMB4Q86W47 210 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 SLC26A11Q86WA9 606 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 TDRPQ86YL5 185 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 TMPRSS6Q8IU80 811 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 AGGF1Q8N302 714 aaeCLIP9.5□□□□□ -0.89
YBX3-215ENST00000544504 TTC30BQ8N4P2 665 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 OR6P1Q8NGX9 317 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 DTX3LQ8TDB6 740 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 SIPA1Q96FS4 1042 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 OMDQ99983 421 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 WDR83Q9BRX9 315 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 EPB41L4BQ9H329 900 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 KDM4CQ9H3R0 1056 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 PCDH12Q9NPG4 1184 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 TMEM9BQ9NQ34 198 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 PPANQ9NQ55 473 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 C20orf96Q9NUD7 363 aaPredicted RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 IL17CQ9P0M4 197 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 VPS18Q9P253 973 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 NFKBIL1Q9UBC1 381 aaPredicted RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 B4GALT6Q9UBX8 382 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 RABGEF1Q9UJ41 708 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 SARDHQ9UL12 918 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 FZD4Q9ULV1 537 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 VPS9D1Q9Y2B5 631 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 SPO11Q9Y5K1 396 aa9.5□□□□□ -0.89
YBX3-215ENST00000544504 HELZ2Q9BYK8 2649 aaKnown RBP9.5□□□□□ -0.89
YBX3-215ENST00000544504 ZCWPW2A0A1B0GU75 182 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 A0A1W2PQF6 199 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 NPIPB15A6NHN6 443 aaPredicted RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 ADAM23O75077 832 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 KRT38O76015 456 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 RHOBTB1O94844 696 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 VAPBO95292 243 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 ALPIP09923 528 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 PIRTP0C851 137 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 MYZAPP0CAP1 466 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 P2RY2P41231 377 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 STC1P52823 247 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 DCDC1P59894 354 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CREB5Q02930 508 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CRY1Q16526 586 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 KBTBD12Q3ZCT8 623 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 GPR33Q49SQ1 333 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 TMEM52BQ4KMG9 183 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 RNF187Q5TA31 235 aaPredicted RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 LYPLAL1Q5VWZ2 237 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 NEPROQ6NW34 567 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 ESRP1Q6NXG1 681 aaKnown RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 NEK5Q6P3R8 708 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CRTC1Q6UUV9 634 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 MARK2Q7KZI7 788 aaKnown RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 PDZD3Q86UT5 571 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 RASSF3Q86WH2 238 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 ZSWIM9Q86XI8 627 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 PROSER1Q86XN7 944 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CTAGE3PQ8IX95 158 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 NRSN1Q8IZ57 195 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CAMKK1Q8N5S9 505 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 MDGA1Q8NFP4 955 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 OR4K2Q8NGD2 314 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 GANCQ8TET4 914 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 HDAC10Q969S8 669 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 VOPP1Q96AW1 172 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 ARRDC3Q96B67 414 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 MFSD3Q96ES6 412 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CDKN2AIPNLQ96HQ2 116 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 DNAJC1Q96KC8 554 aaKnown RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 FCRL3Q96P31 734 aaPredicted RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 ZIM3Q96PE6 472 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 PLEKHG4BQ96PX9 1271 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 TCF12Q99081 682 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 CPNE1Q99829 537 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 DUSP15Q9H1R2 295 aaPredicted RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 ZDHHC4Q9NPG8 344 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 POLR3BQ9NW08 1133 aaPredicted RBP9.49□□□□□ -0.89
YBX3-215ENST00000544504 ZNF180Q9UJW8 692 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 GPSM3Q9Y4H4 160 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 ARL5AQ9Y689 179 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 SLC30A1Q9Y6M5 507 aa9.49□□□□□ -0.89
YBX3-215ENST00000544504 POC1B-GALNT4F8VUJ3 575 aa9.48□□□□□ -0.89
YBX3-215ENST00000544504 F8W8V4 182 aa9.48□□□□□ -0.89
YBX3-215ENST00000544504 AREL1O15033 823 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms