RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CPOXP36551 454 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 EIF2DP41214 584 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 MXI1P50539 228 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 EFNA5P52803 228 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 RWDD2BP57060 319 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 LTBQ06643 244 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 RASA2Q15283 850 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 RNPS1Q15287 305 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 GSTA3Q16772 222 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 DPCR1Q3MIW9 517 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 CCDC184Q52MB2 194 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 TXNDC8Q6A555 127 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 SHFQ7M4L6 423 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 GSTA5Q7RTV2 222 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 ADHFE1Q8IWW8 467 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 DHX40Q8IX18 779 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 EFCAB13Q8IY85 973 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 C17orf53Q8N3J3 647 aaPredicted RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 AADATQ8N5Z0 425 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 FRMD1Q8N878 549 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 SCCPDHQ8NBX0 429 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 CADM4Q8NFZ8 388 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 ARRDC2Q8TBH0 407 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 FAM216AQ8WUB2 273 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 SNAPC3Q92966 411 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 TEKT1Q969V4 418 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 INTS12Q96CB8 462 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 PERPQ96FX8 193 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 CCDC34Q96HJ3 373 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 CNDP2Q96KP4 475 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 CMTM3Q96MX0 182 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 LRFN5Q96NI6 719 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 MEIS3Q99687 375 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 SLC25A33Q9BSK2 321 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 ALDH8A1Q9H2A2 487 aaPredicted RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 RETREG1Q9H6L5 497 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 SH2D4AQ9H788 454 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 UPF2Q9HAU5 1272 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 MAGEE1Q9HCI5 957 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 ZCCHC17Q9NP64 241 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 CISD1Q9NZ45 108 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 ZNF580Q9UK33 172 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 AGO1Q9UL18 857 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 LSM4Q9Y4Z0 139 aaKnown RBP3.29□□□□□ -1.88
USP28-210ENST00000542033 TTC3P53804 2025 aa3.29□□□□□ -1.88
USP28-210ENST00000542033 FAM237BA0A1B0GVD1 139 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 A0A1W2PRG0 241 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 EIF3CLB5ME19 914 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 USP17L23D6RBM5 183 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 NPIPB11E5RHQ5 1161 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 LDLRAD4O15165 306 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SEC14L5O43304 696 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 KLK8O60259 260 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 HNRNPCL1O60812 293 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 KINO60870 393 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 ERAL1O75616 437 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 BAG4O95429 457 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 MMP2P08253 660 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 PIGAP37287 484 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 ZXDBP98169 803 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 CCDC173Q0VFZ6 552 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 LRMPQ12912 555 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 GRIK3Q13003 919 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 PDIA5Q14554 519 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 MED22Q15528 200 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 RUSC1-AS1Q66K80 236 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 TTI2Q6NXR4 508 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 RPUSD3Q6P087 351 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 KLHL35Q6PF15 583 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 C16orf87Q6PH81 154 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 LCTLQ6UWM7 567 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 MEPCEQ7L2J0 689 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 NOXA1Q86UR1 476 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 TICAM1Q8IUC6 712 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SPATA2LQ8IUW3 424 aaPredicted RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 MYOCDQ8IZQ8 938 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 TMEM116Q8NCL8 245 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 BEST2Q8NFU1 509 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 RSPH1Q8WYR4 309 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 ERGIC1Q969X5 290 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 MED30Q96HR3 178 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SPATA17Q96L03 361 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SH3GL3Q99963 347 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SLX1AQ9BQ83 275 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 STRA6Q9BX79 667 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 TEX12Q9BXU0 123 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 TM6SF1Q9BZW5 370 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 AAR2Q9Y312 384 aaKnown RBP3.28□□□□□ -1.88
USP28-210ENST00000542033 ZNF711Q9Y462 761 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 NFE2L3Q9Y4A8 694 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 RUSC2Q8N2Y8 1516 aa3.28□□□□□ -1.88
USP28-210ENST00000542033 SCAPERQ9BY12 1400 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 UTYO14607 1347 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 A0A1W2PQ09 198 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 TSPY2A6NKD2 308 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 SNAP23O00161 211 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 SH2B2O14492 632 aaPredicted RBP3.27□□□□□ -1.89
USP28-210ENST00000542033 ZIC3O60481 467 aa3.27□□□□□ -1.89
USP28-210ENST00000542033 SEC31AO94979 1220 aaKnown RBP3.27□□□□□ -1.89
USP28-210ENST00000542033 HOXB5P09067 269 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms