RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TXNDC5Q8NBS9 432 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 CHST14Q8NCH0 376 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 IPMKQ8NFU5 416 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 OR52K1Q8NGK4 314 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 OR2T3Q8NH03 318 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 PIH1D2Q8WWB5 315 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 PEX13Q92968 403 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RAB7BQ96AH8 199 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RMDN1Q96DB5 314 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 EXOC2Q96KP1 924 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 KLHL32Q96NJ5 620 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 SERPINB12Q96P63 405 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RANBP9Q96S59 729 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 LYSMD1Q96S90 227 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 IER2Q9BTL4 223 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 TDRD1Q9BXT4 1180 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 HDAC8Q9BY41 377 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 IL22Q9GZX6 179 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 CACNA2D2Q9NY47 1150 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 HACD3Q9P035 362 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 RIMKLBQ9ULI2 386 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 MMP17Q9ULZ9 603 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 NDRG2Q9UN36 371 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 CHKBQ9Y259 395 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 TEX264Q9Y6I9 313 aa7.42□□□□□ -1.22
CD44-228ENST00000528455 PTPRZ1P23471 2315 aaPredicted RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 RIF1Q5UIP0 2472 aaKnown RBP7.42□□□□□ -1.22
CD44-228ENST00000528455 CFAP54Q96N23 3096 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 A0A0J9YYE9 177 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TSPAN11A1L157 253 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ANTXRLA6NF34 631 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 C16orf96A6NNT2 1141 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 C1QTNF3-AMACRE9PGA6 284 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 GOLGA8MH3BSY2 632 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ADAM23O75077 832 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 USP12O75317 370 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 AVILO75366 819 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 GJB3O75712 270 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TMEM63AO94886 807 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PAPSS2O95340 614 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 KLF8O95600 359 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 CRTAMO95727 393 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TTC4O95801 387 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TRBC1P01850 177 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 POLBP06746 335 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CTSLP07711 333 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 GSTA2P09210 222 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ATXN1LP0C7T5 689 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 SP9P0CG40 484 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 HLA-EP13747 358 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 HOXB2P14652 356 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TSHRP16473 764 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PRKCHP24723 683 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PSMA3P25788 255 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 GKP32189 559 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 SLC8A1P32418 973 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 MAGEA4P43358 317 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 DGKEP52429 567 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 EPHB1P54762 984 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 SATB1Q01826 763 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TRAF2Q12933 501 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PDIA2Q13087 525 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 SPARCL1Q14515 664 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 STARD3Q14849 445 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ELF2Q15723 593 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CRY1Q16526 586 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 UGP2Q16851 508 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 KCTD19Q17RG1 926 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 SKIDA1Q1XH10 827 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TSNAXIP1Q2TAA8 658 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ZNF528Q3MIS6 628 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 EXOSC6Q5RKV6 272 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 CERCAMQ5T4B2 595 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 SYCP2LQ5T4T6 812 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 ZNF534Q76KX8 674 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TRMT10CQ7L0Y3 403 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 ASCL5Q7RTU5 278 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 KDELC2Q7Z4H8 507 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TMEM135Q86UB9 458 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PALM2Q8IXS6 379 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CBARPQ8N350 705 aaPredicted RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 SPEM1Q8N4L4 309 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CAMKK1Q8N5S9 505 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 OR6K2Q8NGY2 324 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 RPLP0P6Q8NHW5 317 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PIP4K2CQ8TBX8 421 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 GRIN3AQ8TCU5 1115 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 AENQ8WTP8 325 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 PYROXD1Q8WU10 500 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CAVIN3Q969G5 261 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 PPP1R16AQ96I34 528 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TTC25Q96NG3 672 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 EBNA1BP2Q99848 306 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 FICDQ9BVA6 458 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 KIFC1Q9BW19 673 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 TXLNGYQ9BZA5 131 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 NEUROG2Q9H2A3 272 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 CCDC86Q9H6F5 360 aaKnown RBP7.41□□□□□ -1.22
CD44-228ENST00000528455 ZDHHC6Q9H6R6 413 aa7.41□□□□□ -1.22
CD44-228ENST00000528455 MRM3Q9HC36 420 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms