RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CCDC68Q9H2F9 335 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 ALG9Q9H6U8 611 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 LNPEPQ9UIQ6 1025 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 OAS3Q9Y6K5 1087 aaKnown RBP20.62■□□□□ 0.89
VPS28-209ENST00000528142 BPTFQ12830 3046 aa20.62■□□□□ 0.89
VPS28-209ENST00000528142 IPO13O94829 963 aaKnown RBP20.61■□□□□ 0.89
VPS28-209ENST00000528142 PKMP14618 531 aaKnown RBP20.61■□□□□ 0.89
VPS28-209ENST00000528142 PTGER3P43115 390 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 PRKAA1Q13131 559 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 CTSL3PQ5NE16 218 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 FBXW10Q5XX13 1052 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 EPGNQ6UW88 154 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 PIWIL4Q7Z3Z4 852 aaKnown RBP20.61■□□□□ 0.89
VPS28-209ENST00000528142 PLPP6Q8IY26 295 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 GRIN3AQ8TCU5 1115 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 INPP5DQ92835 1189 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 ZNF641Q96N77 438 aaPredicted RBP20.61■□□□□ 0.89
VPS28-209ENST00000528142 TMEM237Q96Q45 408 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 COG4Q9H9E3 785 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 SYTL2Q9HCH5 934 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 ARMCX1Q9P291 453 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 ERVW-1Q9UQF0 538 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 SLC30A1Q9Y6M5 507 aa20.61■□□□□ 0.89
VPS28-209ENST00000528142 H3BMM5 538 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MATN2O00339 956 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 GPR39O43194 453 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 BNIP3LO60238 219 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CYP17A1P05093 508 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 BMP8BP34820 402 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 SERPINB5P36952 375 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 RPL14P50914 215 aaKnown RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 HK2P52789 917 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 GEN1Q17RS7 908 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 VWA5B1Q5TIE3 1220 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 PAQR3Q6TCH7 311 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 TAS2R42Q7RTR8 314 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 PAF1Q8N7H5 531 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CCNYL1Q8N7R7 359 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 OSCP1Q8WVF1 389 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MYLIPQ8WY64 445 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 FAM136AQ96C01 138 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 SCRN2Q96FV2 425 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 NSL1Q96IY1 281 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CNDP1Q96KN2 507 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MRGPRX3Q96LB0 322 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 P2RY12Q9H244 342 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 IL26Q9NPH9 171 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 DUS2Q9NX74 493 aaKnown RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 NCKIPSDQ9NZQ3 722 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 FAM50BQ9Y247 325 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 NPIPB15A6NHN6 443 aaPredicted RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 WASH3PC4AMC7 463 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 HNRNPCL1O60812 293 aaKnown RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 CISD3P0C7P0 127 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 VIPR2P41587 438 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CRTC1Q6UUV9 634 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CERS6Q6ZMG9 384 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 Q6ZVU0 165 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 SLC22A9Q8IVM8 553 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CBARPQ8N350 705 aaPredicted RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 CHST14Q8NCH0 376 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 OR2A12Q8NGT7 310 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 RHEBL1Q8TAI7 183 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MAPK15Q8TD08 544 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MCCC1Q96RQ3 725 aaPredicted RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 GPR21Q99679 349 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 CCDC106Q9BWC9 280 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 LMAN2LQ9H0V9 348 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 TFB2MQ9H5Q4 396 aaKnown RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 SFXN1Q9H9B4 322 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 GALPQ9UBC7 116 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 ZDHHC2Q9UIJ5 367 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 MSRAQ9UJ68 235 aa20.6■□□□□ 0.89
VPS28-209ENST00000528142 APOBEC2Q9Y235 224 aaKnown RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.6■□□□□ 0.89
VPS28-209ENST00000528142 MYOFQ9NZM1 2061 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 SNUPNO95149 360 aaKnown RBP20.59■□□□□ 0.89
VPS28-209ENST00000528142 BPIP17213 487 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 POLR2EP19388 210 aaKnown RBP20.59■□□□□ 0.89
VPS28-209ENST00000528142 ELF3P78545 371 aaPredicted RBP20.59■□□□□ 0.89
VPS28-209ENST00000528142 EML3Q32P44 896 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 FAM151BQ6UXP7 276 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 TPRG1Q6ZUI0 275 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 TSPAN33Q86UF1 283 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 TREML1Q86YW5 311 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 NPAS3Q8IXF0 933 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 STK40Q8N2I9 435 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 FRS2Q8WU20 508 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 DERL2Q9GZP9 239 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 PRO3102Q9H379 93 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 ZDHHC6Q9H6R6 413 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 CYP4F12Q9HCS2 524 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 SORCS3Q9UPU3 1222 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 COMMD10Q9Y6G5 202 aa20.59■□□□□ 0.89
VPS28-209ENST00000528142 F8W8V4 182 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 HOXC11O43248 304 aaPredicted RBP20.58■□□□□ 0.89
VPS28-209ENST00000528142 GRID2O43424 1007 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 PRAMEF1O95521 474 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 ESR1P03372 595 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 PYGLP06737 847 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms