RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CCDC3Q9BQI4 270 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 MLPHQ9BV36 600 aaPredicted RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 NRSN2Q9GZP1 204 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 SUDS3Q9H7L9 328 aaPredicted RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 GULP1Q9UBP9 304 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 SHOC2Q9UQ13 582 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 R3HDM2Q9Y2K5 976 aaKnown RBP10.6□□□□□ -0.71
CD44-227ENST00000528086 ADGRG1Q9Y653 693 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 CAPN6Q9Y6Q1 641 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 RNF215Q9Y6U7 377 aa10.6□□□□□ -0.71
CD44-227ENST00000528086 PRR19A6NJB7 356 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 GAPDHSO14556 408 aaPredicted RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 B4GAT1O43505 415 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 BRINP1O60477 761 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 PMPCBO75439 489 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 FTCDO95954 541 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 CTSEP14091 401 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 BPIP17213 487 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 ADCY8P40145 1251 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 GPR1P46091 355 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 GNPDA1P46926 289 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 EPHB1P54762 984 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 MAZP56270 477 aaKnown RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 WNT3AP56704 352 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 CCL7P80098 99 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 CTBSQ01459 385 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 OTUD4Q01804 1114 aaKnown RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 CDK18Q07002 472 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 KLF1Q13351 362 aaPredicted RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 SIRPB2Q5JXA9 342 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 CERCAMQ5T4B2 595 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 DOK6Q6PKX4 331 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 TAF8Q7Z7C8 310 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 KLHDC8BQ8IXV7 354 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 NAGSQ8N159 534 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 SDR16C5Q8N3Y7 309 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 PAF1Q8N7H5 531 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 FAM46DQ8NEK8 389 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 MAPK15Q8TD08 544 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 ATXN7L3BQ96GX2 97 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 HIC2Q96JB3 615 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 FCRL5Q96RD9 977 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 OSBPL8Q9BZF1 889 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 CARS2Q9HA77 564 aaKnown RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 MAGEE1Q9HCI5 957 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 ARFGAP3Q9NP61 516 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 ASCL3Q9NQ33 180 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 PHPT1Q9NRX4 125 aaPredicted RBP10.59□□□□□ -0.71
CD44-227ENST00000528086 TAAR2Q9P1P5 351 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 IMPACTQ9P2X3 320 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 EFR3BQ9Y2G0 817 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 ZNF711Q9Y462 761 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 PRKAB1Q9Y478 270 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 IGSF10Q6WRI0 2623 aa10.59□□□□□ -0.71
CD44-227ENST00000528086 SMG1Q96Q15 3661 aaKnown RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 AHCTF1Q8WYP5 2266 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 MACROD2A1Z1Q3 448 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GOLGA6CA6NDK9 693 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GOLGA6BA6NDN3 693 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 APOC4-APOC2K7ER74 178 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GPR39O43194 453 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 NDST3O95803 873 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 APOC2P02655 101 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 MPOP05164 745 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GOLGA6DP0CG33 693 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 ITPKBP27987 946 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 ADRA1AP35348 466 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 DUSP3P51452 185 aaPredicted RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 B4GALNT1Q00973 533 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 CFHR1Q03591 330 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 XRCC4Q13426 336 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 PTPRCAPQ14761 206 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 C19orf48Q6RUI8 117 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 ZNF438Q7Z4V0 828 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GKN2Q86XP6 184 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 CCDC50Q8IVM0 306 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 RAVER1Q8IY67 606 aaKnown RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 KIAA1524Q8TCG1 905 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 HTR3CQ8WXA8 447 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 P3H4Q92791 437 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 HES6Q96HZ4 224 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 RBM41Q96IZ5 413 aaKnown RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 FAM83DQ9H4H8 585 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 TRNAU1APQ9NX07 287 aaKnown RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 KCTD5Q9NXV2 234 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 GOLGA6AQ9NYA3 693 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 NFKBIL1Q9UBC1 381 aaPredicted RBP10.58□□□□□ -0.72
CD44-227ENST00000528086 MOSPD1Q9UJG1 213 aa10.58□□□□□ -0.72
CD44-227ENST00000528086 ATMQ13315 3056 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 A0A087WV48 116 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 A6NCN8 305 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 HACD1B0YJ81 288 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 B4DGG1 531 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 PPM1DO15297 605 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 USP12O75317 370 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ECEL1O95672 775 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 AGTP01019 485 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 KELP23276 732 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 COPS2P61201 443 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 NR1D2Q14995 579 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms