RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PDZD7Q9H5P4 517 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 FAM124BQ9H5Z6 455 aaPredicted RBP4.13□□□□□ -1.75
USP54-217ENST00000498213 ASB7Q9H672 318 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 PTPRHQ9HD43 1115 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 UXTQ9UBK9 157 aaPredicted RBP4.13□□□□□ -1.75
USP54-217ENST00000498213 DKK3Q9UBP4 350 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 NAP1L2Q9ULW6 460 aaPredicted RBP4.13□□□□□ -1.75
USP54-217ENST00000498213 PADI4Q9UM07 663 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 AGAP1Q9UPQ3 857 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 ANKRD6Q9Y2G4 727 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 HES2Q9Y543 173 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 INSL5Q9Y5Q6 135 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 MTCL1Q9Y4B5 1905 aaKnown RBP4.13□□□□□ -1.75
USP54-217ENST00000498213 MED13LQ71F56 2210 aa4.13□□□□□ -1.75
USP54-217ENST00000498213 MED13Q9UHV7 2174 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 A0A1B0GVT2 93 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 ARHGEF35A5YM69 484 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 CASTOR2A6NHX0 329 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 SGK1O00141 431 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PODXLO00592 558 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 KLF8O95600 359 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 CLDN1O95832 211 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 BMP15O95972 392 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PIGRP01833 764 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 CLTAP09496 248 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 ZNF883P0CG24 379 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PIM1P11309 404 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 WT1P19544 449 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 EIF2DP41214 584 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 GRK6P43250 576 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 MCM2P49736 904 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 CCT8P50990 548 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 HMGN5P82970 282 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 TWF1Q12792 350 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 BMPR2Q13873 1038 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 NFE2Q16621 373 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 ARL13BQ3SXY8 428 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 KHDC1LQ5JSQ8 128 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 SYCP2LQ5T4T6 812 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PLA2G4FQ68DD2 849 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 SFRP4Q6FHJ7 346 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 NCAPH2Q6IBW4 605 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 TMEM108Q6UXF1 575 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 SLC36A4Q6YBV0 504 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 ZNF788Q6ZQV5 615 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PIK3AP1Q6ZUJ8 805 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 GLCCI1Q86VQ1 547 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PPP1R3BQ86XI6 285 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 CATSPER3Q86XQ3 398 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PRR18Q8N4B5 295 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 ZNF564Q8TBZ8 553 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 SPPL2BQ8TCT7 592 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 MOGAT1Q96PD6 335 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 SEMA3CQ99985 751 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 POLR3FQ9H1D9 316 aaPredicted RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 SLC25A18Q9H1K4 315 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 TASP1Q9H6P5 420 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 TMEM206Q9H813 350 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PDRG1Q9NUG6 133 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 LARSQ9P2J5 1176 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 FBXL5Q9UKA1 691 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 MMP17Q9ULZ9 603 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 UBQLN1Q9UMX0 589 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 NOL7Q9UMY1 257 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 FRMD4BQ9Y2L6 1034 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 C2CD2Q9Y426 696 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 NFE2L3Q9Y4A8 694 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 PCDHGB2Q9Y5G2 931 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 VWA8A3KMH1 1905 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 HELZP42694 1942 aaKnown RBP4.12□□□□□ -1.75
USP54-217ENST00000498213 KNL1Q8NG31 2342 aa4.12□□□□□ -1.75
USP54-217ENST00000498213 BSNQ9UPA5 3926 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 IGHV1OR15-9A0A0B4J2B8 117 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 I3L4J1 428 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 K7EQS6 105 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 MYO1CO00159 1063 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 CLDN3O15551 220 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 RBMXL2O75526 392 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 OR52Z1P0C646 297 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 SFTPCP11686 197 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ODC1P11926 461 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 GNLYP22749 145 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 CDC25AP30304 524 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ALDH9A1P49189 494 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 CLCNKBP51801 687 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ZNF132P52740 706 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 SOX8P57073 446 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 MCL1Q07820 350 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 SRSF4Q08170 494 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 CTTNQ14247 550 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 CLCA4Q14CN2 919 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 MAPRE1Q15691 268 aaKnown RBP4.11□□□□□ -1.75
USP54-217ENST00000498213 ZBTB6Q15916 424 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 CTXN3Q4LDR2 81 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 WDR45BQ5MNZ6 344 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 HYIQ5T013 277 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 EMC10Q5UCC4 262 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 KRT79Q5XKE5 535 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ICE2Q659A1 982 aa4.11□□□□□ -1.75
USP54-217ENST00000498213 ARL6IP4Q66PJ3 421 aaKnown RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms