RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.3■□□□□ 0.2
SF3A1-209ENST00000496189 NEUROG3Q9Y4Z2 214 aa16.3■□□□□ 0.2
SF3A1-209ENST00000496189 SPTBN2O15020 2390 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 GOLGA6L10A0A0M3HER8 536 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 PSMD3O43242 534 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 GCATO75600 419 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 CKMT1AP12532 417 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 ACP1P24666 158 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 PSMB4P28070 264 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 ACADVLP49748 655 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 DCDC1P59894 354 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 SNX1Q13596 522 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 NR0B2Q15466 257 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 OASLQ15646 514 aaKnown RBP16.29■□□□□ 0.2
SF3A1-209ENST00000496189 SIRPB2Q5JXA9 342 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 FAM182AQ5T1J6 154 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 PDPK2PQ6A1A2 396 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 TAF8Q7Z7C8 310 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 CCDC89Q8N998 374 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 CCDC110Q8TBZ0 833 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 BLOC1S5Q8TDH9 187 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 OR1E3Q8WZA6 343 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 OXNAD1Q96HP4 312 aaPredicted RBP16.29■□□□□ 0.2
SF3A1-209ENST00000496189 WDR24Q96S15 920 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 FICDQ9BVA6 458 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 LGR4Q9BXB1 951 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 GSDMCQ9BYG8 508 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 ABCG4Q9H172 646 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 SUDS3Q9H7L9 328 aaPredicted RBP16.29■□□□□ 0.2
SF3A1-209ENST00000496189 FGF22Q9HCT0 170 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 DRG1Q9Y295 367 aaKnown RBP16.29■□□□□ 0.2
SF3A1-209ENST00000496189 PKP3Q9Y446 797 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 SAR1BQ9Y6B6 198 aa16.29■□□□□ 0.2
SF3A1-209ENST00000496189 TDRD6O60522 2096 aaKnown RBP16.29■□□□□ 0.2
SF3A1-209ENST00000496189 INPP4BO15327 924 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 YY2O15391 372 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 PPFIA2O75334 1257 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 GNPDA1P46926 289 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 ETF1P62495 437 aaKnown RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 PDE1BQ01064 536 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 SIX1Q15475 284 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 TCEA2Q15560 299 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 PARP6Q2NL67 630 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 C6orf132Q5T0Z8 1188 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 HENMT1Q5T8I9 393 aaKnown RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 PAPD7Q5XG87 772 aaKnown RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 ALS2CLQ60I27 953 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 DHRS13Q6UX07 377 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 GSTA5Q7RTV2 222 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 TMC3Q7Z5M5 1100 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 COG1Q8WTW3 980 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 NAT6Q93015 286 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 MS4A14Q96JA4 679 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 PLEKHG4BQ96PX9 1271 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 FRMD8Q9BZ67 464 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 MRPL40Q9NQ50 206 aaKnown RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 TOR4AQ9NXH8 423 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 FEZ2Q9UHY8 353 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-209ENST00000496189 GPR34Q9UPC5 381 aa16.28■□□□□ 0.2
SF3A1-209ENST00000496189 C2orf81A6NN90 581 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 GAS8O95995 478 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 IFNB1P01574 187 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 CEACAM5P06731 702 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 GP1BAP07359 652 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 IVLP07476 585 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 CASQ1P31415 396 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 HMGCLP35914 325 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 LMAN1P49257 510 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 BIRC2Q13490 618 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 CDKN3Q16667 212 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 C4orf22Q6V702 233 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 RFLNAQ6ZTI6 216 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 GALNT13Q8IUC8 556 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 PHYKPLQ8IUZ5 450 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 PELI3Q8N2H9 469 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 C17orf53Q8N3J3 647 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-209ENST00000496189 TRAM1L1Q8N609 369 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 ARL10Q8N8L6 244 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 OR6C4Q8NGE1 309 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 RTP4Q96DX8 246 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 TBL1YQ9BQ87 522 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 CLPBQ9H078 707 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 LRRC40Q9H9A6 602 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 TRNAU1APQ9NX07 287 aaKnown RBP16.27■□□□□ 0.2
SF3A1-209ENST00000496189 VPS18Q9P253 973 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 NFKBIL1Q9UBC1 381 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-209ENST00000496189 GULP1Q9UBP9 304 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 RNF14Q9UBS8 474 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 PNMA8BQ9ULN7 279 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-209ENST00000496189 SUFUQ9UMX1 484 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 SLC17A4Q9Y2C5 497 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 MSRB2Q9Y3D2 182 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 GPSM3Q9Y4H4 160 aa16.27■□□□□ 0.2
SF3A1-209ENST00000496189 CPED1A4D0V7 1026 aa16.26■□□□□ 0.19
SF3A1-209ENST00000496189 E7EVH7 732 aa16.26■□□□□ 0.19
SF3A1-209ENST00000496189 STX7O15400 261 aaKnown RBP16.26■□□□□ 0.19
SF3A1-209ENST00000496189 DKK1O94907 266 aa16.26■□□□□ 0.19
SF3A1-209ENST00000496189 SLC25A14O95258 325 aaPredicted RBP16.26■□□□□ 0.19
SF3A1-209ENST00000496189 CRTAMO95727 393 aa16.26■□□□□ 0.19
SF3A1-209ENST00000496189 AGTP01019 485 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms