RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ZHX1-C8orf76Q96EF9 292 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 CNTN3Q9P232 1028 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 ADAMTS5Q9UNA0 930 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 A0A088AWK7 358 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 CHRNGP07510 517 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 CHRNA4P43681 627 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 FSTL4Q6MZW2 842 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 CAPNS2Q96L46 248 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC9A7Q96T83 725 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 EPB41L1Q9H4G0 881 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 PDLIM7Q9NR12 457 aa16.27■□□□□ 0.19
CCDC88B-209ENST00000494080 A0A1W2PPW3 197 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 NRP1O14786 923 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 STAU1O95793 577 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 HGFP14210 728 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 HOXB8P17481 243 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 INCA1Q0VD86 236 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 BNIP2Q12982 314 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 TBC1D25Q3MII6 688 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 FAM45BPQ6NSW5 357 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 PAGE2Q7Z2X7 111 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC44A2Q8IWA5 706 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 OR7D4Q8NG98 312 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 FAM45AQ8TCE6 357 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 UBASH3BQ8TF42 649 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 IRGQQ8WZA9 623 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 UPF1Q92900 1129 aaKnown RBP eCLIP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 NXNL1Q96CM4 212 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 TBATAQ96M53 351 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 TMEM161AQ9NX61 479 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 POLG2Q9UHN1 485 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 BTRCQ9Y297 605 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 PNMA8CA0A1B0GUJ8 204 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ATP6V1E1P36543 226 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 RAB15P59190 212 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 NCBP2-AS2Q69YL0 99 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 IL27RAQ6UWB1 636 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 LINGO4Q6UY18 593 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ARHGAP36Q6ZRI8 547 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 C12orf43Q96C57 262 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 MED8Q96G25 268 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 PLEKHA8Q96JA3 519 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 SMPD3Q9NY59 655 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 GNG14A0A1W2PPG7 69 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 C9JVG2 144 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 CD3EAPO15446 510 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 CAPN1P07384 714 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ADAM17P78536 824 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 PURAQ00577 322 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 KLHL35Q6PF15 583 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 RRM2BQ7LG56 351 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 IGDCC3Q8IVU1 814 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 DENND6AQ8IWF6 608 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 OR4L1Q8NH43 312 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 RDH11Q8TC12 318 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 DPY30Q9C005 99 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 CYTH4Q9UIA0 394 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 MFHAS1Q9Y4C4 1052 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 COL2A1P02458 1487 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 NHSL1Q5SYE7 1610 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 FOXD2O60548 495 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 SEC22BO75396 215 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 CPSF4O95639 269 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 KRT6AP02538 564 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 KRT6BP04259 564 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 GABRR2P28476 465 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 KRT6CP48668 564 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ACLYP53396 1101 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 KLF1Q13351 362 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ZBED5Q49AG3 693 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 STX19Q8N4C7 294 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 HM13Q8TCT9 377 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 PSMG2Q969U7 264 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 TLE6Q9H808 572 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 ARL15Q9NXU5 204 aa16.26■□□□□ 0.19
CCDC88B-209ENST00000494080 IGKV6D-21A0A0A0MT36 114 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 C1RP00736 705 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 FGF1P05230 155 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 MSH3P20585 1137 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 LPOP22079 712 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 STT3AP46977 705 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 ARPC4P59998 168 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 NDUFA5Q16718 116 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 HIST2H2ACQ16777 129 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 HIST2H2AA3Q6FI13 130 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 PRSS55Q6UWB4 352 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 OR4K2Q8NGD2 314 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 FNDC8Q8TC99 324 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 TEKT5Q96M29 485 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 OSGEPL1Q9H4B0 414 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 RHOQP17081 205 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 CCNCP24863 283 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 RPL26P61254 145 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 OLIG2Q13516 323 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 CCDC142Q17RM4 750 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 FBXO48Q5FWF7 155 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 THOC7Q6I9Y2 204 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 ADGRG6Q86SQ4 1221 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 TMEM159Q96B96 161 aa16.25■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC39A8Q9C0K1 460 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms