RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GCATO75600 419 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PIK3CGP48736 1102 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OTUD3Q5T2D3 398 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NPAS4Q8IUM7 802 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LINC01465Q8N7H1 131 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCYOX1LQ8NBM8 494 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PSMA8Q8TAA3 256 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TEKT5Q96M29 485 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OXCT2Q9BYC2 517 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 STMN3Q9NZ72 180 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DCDC2Q9UHG0 476 aa10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RP1L1Q8IWN7 2480 aaPredicted RBP10.73□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HAS3O00219 553 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HOXA2O43364 376 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AP2A1O95782 977 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CHRNGP07510 517 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MAGP20916 626 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MPSTP25325 297 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IST1P53990 364 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TLR1Q15399 786 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SKIV2LQ15477 1246 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PGS1Q32NB8 556 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NIPAL1Q6NVV3 410 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLCO2A1Q92959 643 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IGSF8Q969P0 613 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TUBGCP3Q96CW5 907 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PRICKLE1Q96MT3 831 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 POMKQ9H5K3 350 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CFAP97Q9P2B7 532 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EVLQ9UI08 416 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FARP1Q9Y4F1 1045 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CPQQ9Y646 472 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 COL11A1P12107 1806 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C2orf81A6NN90 581 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ANGPT2O15123 496 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GALTP07902 379 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PRSS56P0CW18 603 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IDO1P14902 403 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TACR2P21452 398 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FASP25445 335 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NNMTP40261 264 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FAM151BQ6UXP7 276 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RTN4RL1Q86UN2 441 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CAMK1DQ8IU85 385 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PLD6Q8N2A8 252 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BPIFB6Q8NFQ5 453 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PTCD3Q96EY7 689 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FCRL3Q96P31 734 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MRPL9Q9BYD2 267 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 REXO4Q9GZR2 422 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZDHHC6Q9H6R6 413 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ADAMTS6Q9UKP5 1117 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCDHB8Q9UN66 801 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPW3 197 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MTMR11A4FU01 709 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C2orf78A6NCI8 922 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AGRPO00253 132 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRIM13O60858 407 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MYO1DO94832 1006 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TFEBP19484 476 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GRIA4P48058 902 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RXRGP48443 463 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LSM3P62310 102 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ENPEPQ07075 957 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RALGDSQ12967 914 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BOP1Q14137 746 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PTPRNQ16849 979 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCID2Q5JVF3 399 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GPR158Q5T848 1215 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MRNIPQ6NTE8 343 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KYAT3Q6YP21 454 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PIM3Q86V86 326 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLAIN1Q8ND83 568 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KLHDC9Q8NEP7 349 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C12orf43Q96C57 262 aaKnown RBP10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OLFM1Q99784 485 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CPNE1Q99829 537 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZMYM5Q9UJ78 669 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RNF112Q9ULX5 631 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BTRCQ9Y297 605 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PLLPQ9Y342 182 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DGKBQ9Y6T7 804 aa10.72□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TCRBV5S1A1TA0A578 114 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IQCF5A8MTL0 148 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMEM233B4DJY2 109 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BTN3A1O00481 513 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 AURKAO14965 403 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FYNP06241 537 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KPNA2P52292 529 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ADGRE1Q14246 886 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SPANXN3Q5MJ09 141 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMTC4Q5T4D3 741 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C4orf22Q6V702 233 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DNAJC14Q6Y2X3 702 aaPredicted RBP10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC22A17Q8WUG5 538 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RCN3Q96D15 328 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MTFMTQ96DP5 389 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MAGED4Q96JG8 741 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RNF38Q9H0F5 515 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TLE6Q9H808 572 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms