RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RAPH1Q70E73 1250 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 OTOAQ7RTW8 1153 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 LYSMD3Q7Z3D4 306 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 LDB1Q86U70 411 aaPredicted RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 NUDCD3Q8IVD9 361 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 UBALD2Q8IYN6 164 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 CENPLQ8N0S6 344 aaPredicted RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 GPATCH11Q8N954 259 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 GRIN3AQ8TCU5 1115 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 ERLEC1Q96DZ1 483 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 TSPAN17Q96FV3 270 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 TCF12Q99081 682 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 INTS10Q9NVR2 710 aaKnown RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 ZNF358Q9NW07 568 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 ACOT9Q9Y305 439 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 WASF2Q9Y6W5 498 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 PIKFYVEQ9Y2I7 2098 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 ATXN2Q99700 1313 aaKnown RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 A0A087X1B8 175 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SLC4A1P02730 911 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 APOA4P06727 396 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 ALPIP09923 528 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SAT1P21673 171 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 TARSP26639 723 aaKnown RBP14.14□□□□□ -0.15
CUX1-209ENST00000487284 NTSR1P30989 418 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 HMGCLP35914 325 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SLC12A2P55011 1212 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 RAD51Q06609 339 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 FASTKD1Q53R41 847 aaKnown RBP14.14□□□□□ -0.15
CUX1-209ENST00000487284 C9orf64Q5T6V5 341 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 CCDC91Q7Z6B0 441 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SDCCAG8Q86SQ7 713 aaPredicted RBP14.14□□□□□ -0.15
CUX1-209ENST00000487284 ZSWIM9Q86XI8 627 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SIX5Q8N196 739 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 ZNF687Q8N1G0 1237 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 ANKS4BQ8N8V4 417 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 CCDC63Q8NA47 563 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 IL17RCQ8NAC3 791 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 ZNF641Q96N77 438 aaPredicted RBP14.14□□□□□ -0.15
CUX1-209ENST00000487284 LYSMD1Q96S90 227 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 NDNQ99608 321 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 OLFM1Q99784 485 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 HEPHQ9BQS7 1158 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 TSSK1BQ9BXA7 367 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 GPR63Q9BZJ6 419 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 SUV39H2Q9H5I1 410 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 COPG2Q9UBF2 871 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 FKBPLQ9UIM3 349 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 PPIL1Q9Y3C6 166 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 LRRK1Q38SD2 2015 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 MUC3AQ02505 3323 aa14.14□□□□□ -0.15
CUX1-209ENST00000487284 NPC1O15118 1278 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ADAM23O75077 832 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 WISP3O95389 354 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 KLF8O95600 359 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 UGT2B4P06133 528 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CTSLP07711 333 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 NEFHP12036 1026 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ALDH3A1P30838 453 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PGGT1BP53609 377 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 STARD6P59095 220 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 IRX4P78413 519 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 BST1Q10588 318 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PEX6Q13608 980 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 E2F5Q15329 346 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CHI3L2Q15782 390 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CDKN3Q16667 212 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 TSNAXIP1Q2TAA8 658 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 FBXO43Q4G163 708 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 HECTD2Q5U5R9 776 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ATG16L1Q676U5 607 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 FAM45BPQ6NSW5 357 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 STK40Q8N2I9 435 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PNPLA1Q8N8W4 532 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 TXNDC5Q8NBS9 432 aaKnown RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 RDH11Q8TC12 318 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 FAM45AQ8TCE6 357 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 KCNV2Q8TDN2 545 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 KCTD4Q8WVF5 259 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 EID2BQ96D98 161 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 TSNARE1Q96NA8 513 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 FOXQ1Q9C009 403 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 NMRAL1Q9HBL8 299 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 LTB4R2Q9NPC1 389 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PRSS16Q9NQE7 514 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 SUN2Q9UH99 717 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 MID2Q9UJV3 735 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PKP3Q9Y446 797 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 A0A1W2PQ67 120 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 SNNO75324 88 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 LEFTY1O75610 366 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 KLHL2O95198 593 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CHRNB1P11230 501 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 FGF3P11487 239 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 CPA3P15088 417 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 MC4RP32245 332 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 HNF1BP35680 557 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 MRPS21P82921 87 aaKnown RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 XIAPP98170 497 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ELAVL3Q14576 367 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms