RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 SCN8AQ9UQD0 1980 aa18.59■□□□□ 0.57
USP39-209ENST00000458268 TNFRSF10CO14798 259 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 AURKAO14965 403 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 AGTP01019 485 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 HOXC4P09017 264 aaPredicted RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 AK4P27144 223 aaPredicted RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 MPP3Q13368 585 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 ILKQ13418 452 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 OLIG2Q13516 323 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 RPS6KA1Q15418 735 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 SMAD1Q15797 465 aaKnown RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 SLC14A2Q15849 920 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 PERM1Q5SV97 790 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 SLC30A9Q6PML9 568 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 CCNI2Q6ZMN8 369 aaPredicted RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 ARHGEF18Q6ZSZ5 1173 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 SFTPA2Q8IWL1 248 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 FAM71DQ8N9W8 422 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 FAM181AQ8N9Y4 354 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 TTC13Q8NBP0 860 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 ATG4AQ8WYN0 398 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 ZCCHC14Q8WYQ9 949 aaKnown RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 GATA6Q92908 595 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 TADA1Q96BN2 335 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 TBATAQ96M53 351 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 FRMD8Q9BZ67 464 aaPredicted RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 MAGEE1Q9HCI5 957 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 PADI4Q9UM07 663 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 PRKAB1Q9Y478 270 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 PLEKHM1Q9Y4G2 1056 aa18.58■□□□□ 0.56
USP39-209ENST00000458268 MAP1BP46821 2468 aaKnown RBP18.58■□□□□ 0.56
USP39-209ENST00000458268 FADS2P1A8MWK0 482 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ANXA9O76027 345 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 PYGLP06737 847 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 E2F1Q01094 437 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 INSM1Q01101 510 aaPredicted RBP18.57■□□□□ 0.56
USP39-209ENST00000458268 ILF3Q12906 894 aaKnown RBP eCLIP18.57■□□□□ 0.56
USP39-209ENST00000458268 TARDBPQ13148 414 aaKnown RBP eCLIP18.57■□□□□ 0.56
USP39-209ENST00000458268 BIRC2Q13490 618 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 SPARCL1Q14515 664 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ZNF569Q5MCW4 686 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ZNF648Q5T619 568 aaPredicted RBP18.57■□□□□ 0.56
USP39-209ENST00000458268 GLT6D1Q7Z4J2 308 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 TMPRSS12Q86WS5 348 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ARL10Q8N8L6 244 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 GPR26Q8NDV2 337 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 EID2BQ96D98 161 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 SPATA13Q96N96 652 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 WDR24Q96S15 920 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 BOCQ9BWV1 1114 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 USP29Q9HBJ7 922 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 NCKIPSDQ9NZQ3 722 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ZNHIT2Q9UHR6 403 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 CLCA2Q9UQC9 943 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 PPP2R2CQ9Y2T4 447 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 AKAP13Q12802 2813 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 RP1P56715 2156 aa18.57■□□□□ 0.56
USP39-209ENST00000458268 ARHGEF17Q96PE2 2063 aaPredicted RBP18.56■□□□□ 0.56
USP39-209ENST00000458268 ASXL3Q9C0F0 2248 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 ZFC3H1O60293 1989 aaKnown RBP18.56■□□□□ 0.56
USP39-209ENST00000458268 OPA1O60313 960 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 USP12O75317 370 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 MT-CO3P00414 261 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 FUCA1P04066 466 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 CDK4P11802 303 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 SNX1Q13596 522 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 SLC1A5Q15758 541 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 HENMT1Q5T8I9 393 aaKnown RBP18.56■□□□□ 0.56
USP39-209ENST00000458268 GALNT13Q8IUC8 556 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 GDAP1Q8TB36 358 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 MDM1Q8TC05 714 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 CCDC74AQ96AQ1 378 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 OR2M4Q96R27 311 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 TMEM121Q9BTD3 319 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 GSDMCQ9BYG8 508 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 CDH19Q9H159 772 aa18.56■□□□□ 0.56
USP39-209ENST00000458268 OAS3Q9Y6K5 1087 aaKnown RBP18.56■□□□□ 0.56
USP39-209ENST00000458268 LOC285095A0A1B0GVY8 99 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 CASC3O15234 703 aaKnown RBP18.55■□□□□ 0.56
USP39-209ENST00000458268 FGF1P05230 155 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 PROS1P07225 676 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 BPIP17213 487 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 HLA-DPA1P20036 260 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 TEAD1P28347 426 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 ADCY8P40145 1251 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 ACTR1BP42025 376 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 PPM1FP49593 454 aaPredicted RBP18.55■□□□□ 0.56
USP39-209ENST00000458268 ACTR1AP61163 376 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 CTBSQ01459 385 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 MEI1Q5TIA1 1274 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 TMC3Q7Z5M5 1100 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 Q8N9G6 341 aaPredicted RBP18.55■□□□□ 0.56
USP39-209ENST00000458268 C1orf54Q8WWF1 131 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 ANP32BQ92688 251 aaKnown RBP18.55■□□□□ 0.56
USP39-209ENST00000458268 NAT6Q93015 286 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 CCDC3Q9BQI4 270 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 GORASP1Q9BQQ3 440 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 SLC17A4Q9Y2C5 497 aa18.55■□□□□ 0.56
USP39-209ENST00000458268 EME2A4GXA9 379 aaPredicted RBP18.54■□□□□ 0.56
USP39-209ENST00000458268 TRABD2BA6NFA1 517 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms