RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KCTD8Q6ZWB6 473 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 EPHX4Q8IUS5 362 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CLDN19Q8N6F1 224 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 PNPT1Q8TCS8 783 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 GPR21Q99679 349 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 KCTD14Q9BQ13 255 aaPredicted RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 UNC93B1Q9H1C4 597 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CCDC68Q9H2F9 335 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 PRDM16Q9HAZ2 1276 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FANCEQ9HB96 536 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FAM105AQ9NUU6 356 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 DUS2Q9NX74 493 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 PLK2Q9NYY3 685 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 SELENONQ9NZV5 590 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 GMIPQ9P107 970 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 PRPF19Q9UMS4 504 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 DMTF1Q9Y222 760 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CBX4O00257 560 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ARPC2O15144 300 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MYL4P12829 197 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 OR1E1P30953 314 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 HMGCS1Q01581 520 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 RHDQ02161 417 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 LIPEQ05469 1076 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TWF1Q12792 350 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 LRP8Q14114 963 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TECRLQ5HYJ1 363 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 NHSL2Q5HYW2 709 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 SIRPB2Q5JXA9 342 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MBOAT1Q6ZNC8 495 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 LPCAT1Q8NF37 534 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 OR4K2Q8NGD2 314 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 BRI3BPQ8WY22 251 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ASB9Q96DX5 294 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MUS81Q96NY9 551 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 BTBD9Q96Q07 612 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PPP1R10Q96QC0 940 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 ZBED2Q9BTP6 218 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 EFHD1Q9BUP0 239 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TM6SF2Q9BZW4 377 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TUBB1Q9H4B7 451 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ZDHHC7Q9NXF8 308 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PTTG2Q9NZH5 202 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 AAR2Q9Y312 384 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 ARID1BQ8NFD5 2236 aaPredicted RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 GPR182O15218 404 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 SYNCRIPO60506 623 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 B4GALT3O60512 393 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 E2F6O75461 281 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PAMP19021 973 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 IL10P22301 178 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 RXRGP48443 463 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TRIM32Q13049 653 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 GRM2Q14416 872 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ZNF235Q14590 738 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PTPRNQ16849 979 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 FAM187BQ17R55 369 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 DUSP28Q4G0W2 176 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 GALNT18Q6P9A2 607 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 SETD3Q86TU7 594 aaPredicted RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 ISCA2Q86U28 154 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ZNF280BQ86YH2 543 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 GPC2Q8N158 579 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 RNF175Q8N4F7 328 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 SMARCD1Q96GM5 515 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ADAM2Q99965 735 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 GSTO2Q9H4Y5 243 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.62□□□□□ -1.03
USP40-203ENST00000427112 RAB26Q9ULW5 256 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ZNF831Q5JPB2 1677 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MYO1GB0I1T2 1018 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 M0QZ92 97 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MGEA5O60502 916 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ANXA9O76027 345 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PSMA4P25789 261 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 RPS24P62847 133 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 SF1Q15637 639 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 PIK3R6Q5UE93 754 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 FAM117BQ6P1L5 589 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 C4orf22Q6V702 233 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 PIWIL4Q7Z3Z4 852 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 BNIPLQ7Z465 357 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ITIH5Q86UX2 942 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 OR13J1Q8NGT2 312 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 OR2T34Q8NGX1 318 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 OR2T3Q8NH03 318 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 ISOC1Q96CN7 298 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 CCDC138Q96M89 665 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 RHNO1Q9BSD3 238 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 C17orf80Q9BSJ5 609 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 KIFC1Q9BW19 673 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 AP5M1Q9H0R1 490 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 MARCH7Q9H992 704 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 SACM1LQ9NTJ5 587 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 TRNAU1APQ9NX07 287 aaKnown RBP8.62□□□□□ -1.03
USP40-203ENST00000427112 ADAM28Q9UKQ2 775 aa8.62□□□□□ -1.03
USP40-203ENST00000427112 C17orf102A2RUQ5 167 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 AZIN1O14977 448 aa8.61□□□□□ -1.03
USP40-203ENST00000427112 DENRO43583 198 aaKnown RBP8.61□□□□□ -1.03
USP40-203ENST00000427112 XPNPEP2O43895 674 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms