RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PTPRHQ9HD43 1115 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHGB1Q9Y5G3 927 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 B3GALT2O43825 422 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TLR5O60602 858 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CLDN11O75508 207 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 WFS1O76024 890 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CST1P01037 141 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MIPP30301 263 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SCTRP47872 440 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SMAD3P84022 425 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ENPEPQ07075 957 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 VSTM1Q6UX27 236 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MADDQ8WXG6 1647 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 KIAA1143Q96AT1 154 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 FAM210AQ96ND0 272 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 RAB11FIP5Q9BXF6 653 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CEP41Q9BYV8 373 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 HHATLQ9HCP6 504 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MED31Q9Y3C7 131 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 NEMP2A6NFY4 417 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 E5RJQ4 531 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MPZL2O60487 215 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 REM1O75628 298 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PAPSS2O95340 614 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MT-CO1P00395 513 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 EPHX1P07099 455 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 FAM228BP0C875 321 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 GSTT2BP0CG30 244 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ECHS1P30084 290 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 HTR7P34969 479 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF132P52740 706 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SLC13A2Q13183 592 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 IRGCQ6NXR0 463 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CRTC3Q6UUV7 619 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SLC30A10Q6XR72 485 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SPATA19Q7Z5L4 167 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 KATNAL2Q8IYT4 538 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PPTC7Q8NI37 304 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SLC5A5Q92911 643 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 NMD3Q96D46 503 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 LINGO1Q96FE5 620 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SEMA3CQ99985 751 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 CDH19Q9H159 772 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 EQTNQ9NQ60 294 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TMPRSS4Q9NRS4 437 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PHF24Q9UPV7 400 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHGB7Q9Y5F8 929 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF536O15090 1300 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PLK4O00444 970 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TNFRSF21O75509 655 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 KLK3P07288 261 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 NR4A1P22736 598 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PSMB4P28070 264 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 IRAK1P51617 712 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PTPN5P54829 565 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 BTN3A2P78410 334 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ATP1A4Q13733 1029 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ABCA11PQ4W5N1 156 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZC3H12AQ5D1E8 599 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 LIPMQ5VYY2 423 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SLC30A6Q6NXT4 461 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 PLPPR4Q7Z2D5 763 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF227Q86WZ6 799 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 MSL3Q8N5Y2 521 aaKnown RBP6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TTLQ8NG68 377 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 TCP10LQ8TDR4 215 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 SLC22A18Q96BI1 424 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 DEFB118Q96PH6 123 aa6.84□□□□□ -1.31
SCN1A-204ENST00000423058 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.84□□□□□ -1.32
SCN1A-204ENST00000423058 WNT10BO00744 389 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 DCXO43602 365 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 TSPAN9O75954 239 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 TRUB2O95900 331 aaKnown RBP6.84□□□□□ -1.32
SCN1A-204ENST00000423058 DHFRP00374 187 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 CFIP05156 583 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 SCNN1GP51170 649 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 BDH1Q02338 343 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 VGLL4Q14135 290 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 TNFAIP8L3Q5GJ75 292 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 FAM151BQ6UXP7 276 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 RAB11FIP2Q7L804 512 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 ZCCHC9Q8N567 271 aaKnown RBP6.84□□□□□ -1.32
SCN1A-204ENST00000423058 ALLCQ8N6M5 410 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 BHLHE22Q8NFJ8 381 aaPredicted RBP6.84□□□□□ -1.32
SCN1A-204ENST00000423058 AZIN2Q96A70 460 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 BTN2A3PQ96KV6 586 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 FCRL4Q96PJ5 515 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 P2RX7Q99572 595 aaKnown RBP6.84□□□□□ -1.32
SCN1A-204ENST00000423058 GSDMCQ9BYG8 508 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 ADAM7Q9H2U9 754 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 BPIFA1Q9NP55 256 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 NAALADL1Q9UQQ1 740 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 PTCH2Q9Y6C5 1203 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 SLIT1O75093 1534 aa6.84□□□□□ -1.32
SCN1A-204ENST00000423058 USP31Q70CQ4 1352 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RBM47A0AV96 593 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PSMD11O00231 422 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 FFAR3O14843 346 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GPR42O15529 346 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms