RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CTBSQ01459 385 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 HLTFQ14527 1009 aaKnown RBP eCLIP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 C19orf48Q6RUI8 117 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 MARK2Q7KZI7 788 aaKnown RBP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 TMC3Q7Z5M5 1100 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 GPR26Q8NDV2 337 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 PATE1Q8WXA2 126 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 SCG3Q8WXD2 468 aaKnown RBP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 NAT6Q93015 286 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 HIC2Q96JB3 615 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 DEPDC7Q96QD5 511 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 ANP32EQ9BTT0 268 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 ADGRE3Q9BY15 652 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 IMPACTQ9P2X3 320 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 DNPEPQ9ULA0 475 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 PACSIN2Q9UNF0 486 aaPredicted RBP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 ZNF711Q9Y462 761 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 AK5Q9Y6K8 562 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 RNF215Q9Y6U7 377 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 PKD1L2Q7Z442 2459 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 BPTFQ12830 3046 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 SCN8AQ9UQD0 1980 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 APOC4-APOC2K7ER74 178 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 USP12O75317 370 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 APOC2P02655 101 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 ATP1A1P05023 1023 aaKnown RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 MPOP05164 745 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 FGF1P05230 155 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 PYGMP11217 842 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 CHRNA4P43681 627 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 MAZP56270 477 aaKnown RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 OTUD4Q01804 1114 aaKnown RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 SLC14A2Q15849 920 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 ZNF648Q5T619 568 aaPredicted RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 BZW1Q7L1Q6 419 aaKnown RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 B3GNT8Q7Z7M8 397 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 C17orf82Q86X59 251 aaPredicted RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 KIAA1524Q8TCG1 905 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 HTR3CQ8WXA8 447 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 ATXN7L3BQ96GX2 97 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 MRGPRX2Q96LB1 330 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 OSBPL8Q9BZF1 889 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 DPEP2Q9H4A9 486 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 ARFGAP3Q9NP61 516 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 TRNAU1APQ9NX07 287 aaKnown RBP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 TAAR2Q9P1P5 351 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.94■□□□□ 0.62
SF3A1-202ENST00000411423 PRKAB1Q9Y478 270 aa18.94■□□□□ 0.62
SF3A1-202ENST00000411423 NBEAQ8NFP9 2946 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 LOC285095A0A1B0GVY8 99 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 MACROD2A1Z1Q3 448 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 DDX3YO15523 660 aaKnown RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 DNAJC6O75061 913 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 IPO7O95373 1038 aaKnown RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 NDST3O95803 873 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 SLC4A1P02730 911 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 PTPN7P35236 360 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 WNT3AP56704 352 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 COPS2P61201 443 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 C14orf28Q4W4Y0 310 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 PYCR3Q53H96 274 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 CERCAMQ5T4B2 595 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 ALS2CLQ60I27 953 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 SLC30A9Q6PML9 568 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 PID1Q7Z2X4 250 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 KIAA1328Q86T90 577 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 RAVER1Q8IY67 606 aaKnown RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 ACTL9Q8TC94 416 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 PRR11Q96HE9 360 aaPredicted RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 FAM83DQ9H4H8 585 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 SYNDIG1Q9H7V2 258 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 ZFYVE1Q9HBF4 777 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 MAGEE1Q9HCI5 957 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 PKD2L2Q9NZM6 624 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 KLHL8Q9P2G9 620 aaPredicted RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 CAPN6Q9Y6Q1 641 aa18.93■□□□□ 0.62
SF3A1-202ENST00000411423 ARHGEF17Q96PE2 2063 aaPredicted RBP18.93■□□□□ 0.62
SF3A1-202ENST00000411423 ITPR1Q14643 2758 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 CCDC66A2RUB6 948 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 HACD1B0YJ81 288 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 EML2O95834 649 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 FTCDO95954 541 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 RWDD2BP57060 319 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 RBM44Q6ZP01 1051 aaKnown RBP18.92■□□□□ 0.62
SF3A1-202ENST00000411423 TMPRSS9Q7Z410 1059 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 NAGSQ8N159 534 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 Q8N9G6 341 aaPredicted RBP18.92■□□□□ 0.62
SF3A1-202ENST00000411423 ZDHHC1Q8WTX9 485 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 HNRNPLLQ8WVV9 542 aaKnown RBP18.92■□□□□ 0.62
SF3A1-202ENST00000411423 CRELD1Q96HD1 420 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 OR2M4Q96R27 311 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 FCRL5Q96RD9 977 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 FAM153AQ9UHL3 310 aa18.92■□□□□ 0.62
SF3A1-202ENST00000411423 ANKRD11Q6UB99 2663 aaPredicted RBP18.91■□□□□ 0.62
SF3A1-202ENST00000411423 H7C0C1 242 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 ECEL1O95672 775 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 RPLP0P05388 317 aaKnown RBP18.91■□□□□ 0.62
SF3A1-202ENST00000411423 GLB1P16278 677 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 BPIP17213 487 aa18.91■□□□□ 0.62
SF3A1-202ENST00000411423 CA5AP35218 305 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms