RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 C19orf43Q9BQ61 176 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 LRRC40Q9H9A6 602 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 ETNK1Q9HBU6 452 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 PCOLCE2Q9UKZ9 415 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 PCDHGC4Q9Y5F7 938 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 UNC13CQ8NB66 2214 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 A0A0J9YYE9 177 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 GOLGA6CA6NDK9 693 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 GOLGA6BA6NDN3 693 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 UPK3BL1B0FP48 263 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ANKRD66B4E2M5 251 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 UPK3BL2E5RIL1 263 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 TTI1O43156 1089 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 PLRG1O43660 514 aaKnown RBP9.2□□□□□ -0.94
VPS53-203ENST00000401468 CBFA2T3O75081 653 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 NEBLO76041 1014 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 SEC31AO94979 1220 aaKnown RBP9.2□□□□□ -0.94
VPS53-203ENST00000401468 NDST3O95803 873 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CER1O95813 267 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 TRBC1P01850 177 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 PROS1P07225 676 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 GOLGA6DP0CG33 693 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 HLA-DPA1P20036 260 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CD27P26842 260 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ACTN2P35609 894 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 MMP12P39900 470 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 DPP6P42658 865 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 MAGEA3P43357 314 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 NEK3P51956 506 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 C21orf59P57076 290 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CDK18Q07002 472 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ITKQ08881 620 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 SFSWAPQ12872 951 aaKnown RBP9.2□□□□□ -0.94
VPS53-203ENST00000401468 BNIP3Q12983 259 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 GPS1Q13098 491 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 PRPSAP1Q14558 356 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 SHBQ15464 509 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 TCEA2Q15560 299 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CDKN3Q16667 212 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ARMC12Q5T9G4 340 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 RNASEH2BQ5TBB1 312 aaKnown RBP9.2□□□□□ -0.94
VPS53-203ENST00000401468 DUPD1Q68J44 220 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 C19orf48Q6RUI8 117 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ZNF534Q76KX8 674 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ERN2Q76MJ5 926 aaKnown RBP9.2□□□□□ -0.94
VPS53-203ENST00000401468 RABEPKQ7Z6M1 372 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 HOOK3Q86VS8 718 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 NAT8LQ8N9F0 302 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 MCUQ8NE86 351 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 MDM1Q8TC05 714 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CPT1BQ92523 772 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 SCRN2Q96FV2 425 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ERP44Q9BS26 406 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 CARD6Q9BX69 1037 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 ADGRE3Q9BY15 652 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 PCED1AQ9H1Q7 454 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 RAB6BQ9NRW1 208 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 GOLGA6AQ9NYA3 693 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 PHTF1Q9UMS5 762 aa9.2□□□□□ -0.94
VPS53-203ENST00000401468 A0A1W2PPC4 97 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CAPN8A6NHC0 703 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TAF4O00268 1085 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 KPNA3O00505 521 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 DNALI1O14645 258 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 SLC31A1O15431 190 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 PMPCBO75439 489 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 FGF1P05230 155 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 MLNP12872 115 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 PSMA3P25788 255 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 ABL2P42684 1182 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CTSKP43235 329 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CLDN2P57739 230 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CCDC15Q0P6D6 951 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 RALGDSQ12967 914 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 PPP1R7Q15435 360 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TEAD4Q15561 434 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TRIP13Q15645 432 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 TMEM52BQ4KMG9 183 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 ZNF542PQ5EBM4 170 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 SIRPB2Q5JXA9 342 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 ZNF385CQ66K41 422 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 SEL1L3Q68CR1 1132 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 NAPEPLDQ6IQ20 393 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 HIBCHQ6NVY1 386 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 NEK5Q6P3R8 708 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 DHRS13Q6UX07 377 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 DPPA4Q7L190 304 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 RAB44Q7Z6P3 723 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 PCGF5Q86SE9 256 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 LINC00523Q86TU6 105 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 PPIL6Q8IXY8 311 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 RYBPQ8N488 228 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 EID2Q8N6I1 236 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 LRRC45Q96CN5 670 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TBL1YQ9BQ87 522 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TRIM51Q9BSJ1 452 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 LRRC1Q9BTT6 524 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 FAM129AQ9BZQ8 928 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 SGK2Q9HBY8 427 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 MAGEE1Q9HCI5 957 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms