RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ANKMY1Q9P2S6 941 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 TRAF6Q9Y4K3 522 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 A0A096LPK6 155 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ZNF839A8K0R7 811 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 JRKO75564 520 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SEC24DO94855 1032 aaPredicted RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 TYMPP19971 482 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 IDUAP35475 653 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 GRIA3P42263 894 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 PTPN9P43378 593 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 GRIA4P48058 902 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 LIMK2P53671 638 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ARPP19P56211 112 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SHHQ15465 462 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 MAPRE2Q15555 327 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SAMD4BQ5PRF9 694 aaKnown RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 SCYL2Q6P3W7 929 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 CYP2R1Q6VVX0 501 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 DHFR2Q86XF0 187 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 PELI3Q8N2H9 469 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 COLGALT1Q8NBJ5 622 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 OR2T34Q8NGX1 318 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 OR2T3Q8NH03 318 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 HERVK_113Q902F9 699 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 KHSRPQ92945 711 aaKnown RBP eCLIP11.12□□□□□ -0.633e-7■■■■□ 19.9
CUX1-204ENST00000393824 ZUFSPQ96AP4 578 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 TMEM175Q9BSA9 504 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 C9orf16Q9BUW7 83 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 COLEC11Q9BWP8 271 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 DNAI2Q9GZS0 605 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 CDH9Q9ULB4 789 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SAC3D1A6NKF1 404 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 CLOCKO15516 846 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 TBC1D4O60343 1298 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 MAP3K6O95382 1288 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 JUNP05412 331 aaKnown RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 POLBP06746 335 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 MBL2P11226 248 aaPredicted RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 DNAJB1P25685 340 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 DNAJB2P25686 324 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 HADHAP40939 763 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 PGFP49763 221 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 ATP6V0D1P61421 351 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 CRADDP78560 199 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 SLC6A3Q01959 620 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 ATP6AP1Q15904 470 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 FSTL4Q6MZW2 842 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 C8orf82Q6P1X6 216 aaPredicted RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 PSRC1Q6PGN9 363 aaPredicted RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 ZYG11AQ6WRX3 759 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 SPRED1Q7Z699 444 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 TMEM151AQ8N4L1 468 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 TTC30BQ8N4P2 665 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 GOLM1Q8NBJ4 401 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 ABHD11Q8NFV4 315 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 GPR152Q8TDT2 470 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 HTR3CQ8WXA8 447 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 CERS2Q96G23 380 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 SLC45A3Q96JT2 553 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 ZBED2Q9BTP6 218 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 HTATIP2Q9BUP3 242 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 DUSP16Q9BY84 665 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 MAGEE1Q9HCI5 957 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 NGRNQ9NPE2 291 aaKnown RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 AGPAT4Q9NRZ5 378 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 SACM1LQ9NTJ5 587 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 GPATCH2LQ9NWQ4 482 aa11.11□□□□□ -0.63
CUX1-204ENST00000393824 RCOR3Q9P2K3 495 aaPredicted RBP11.11□□□□□ -0.63
CUX1-204ENST00000393824 E2F8A0AVK6 867 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 HHLA1C9JL84 531 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 UGT2B4P06133 528 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 C2P06681 752 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ERVK-10P10266 1014 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 LCP1P13796 627 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 NPR3P17342 541 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 TFE3P19532 575 aaPredicted RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 TGM1P22735 817 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 MGAT1P26572 445 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 SCNN1AP37088 669 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 HPCAL1P37235 193 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 RALGDSQ12967 914 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 NEDD8Q15843 81 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CA9Q16790 459 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CDO1Q16878 200 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CTXN3Q4LDR2 81 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CCNYL2Q5T2Q4 361 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 GTF2IRD2BQ6EKJ0 949 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 FAM45BPQ6NSW5 357 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 HACD2Q6Y1H2 254 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 GK5Q6ZS86 529 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 USP51Q70EK9 711 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 GTF2IRD2Q86UP8 949 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 METTL23Q86XA0 190 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CMTR2Q8IYT2 770 aaKnown RBP11.1□□□□□ -0.63
CUX1-204ENST00000393824 LSMEM2Q8N112 164 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 TMCO5AQ8N6Q1 288 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 ATP6V0D2Q8N8Y2 350 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 SCAMP5Q8TAC9 235 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 FAM45AQ8TCE6 357 aa11.1□□□□□ -0.63
CUX1-204ENST00000393824 CENPIQ92674 756 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms